Thamnophis sirtalis (common garter snake): 106556967
Help
Entry
106556967 CDS
T06107
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04010
MAPK signaling pathway
tsr04120
Ubiquitin mediated proteolysis
tsr04140
Autophagy - animal
tsr04144
Endocytosis
tsr04620
Toll-like receptor signaling pathway
tsr04621
NOD-like receptor signaling pathway
tsr04622
RIG-I-like receptor signaling pathway
tsr05132
Salmonella infection
tsr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106556967 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
106556967 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106556967 (TRAF6)
04140 Autophagy - animal
106556967 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
106556967 (TRAF6)
04621 NOD-like receptor signaling pathway
106556967 (TRAF6)
04622 RIG-I-like receptor signaling pathway
106556967 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
106556967 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
106556967 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106556967 (TRAF6)
04121 Ubiquitin system [BR:
tsr04121
]
106556967 (TRAF6)
Enzymes [BR:
tsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106556967 (TRAF6)
Membrane trafficking [BR:
tsr04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
106556967 (TRAF6)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
106556967 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
TRAF6_Z2
zf-C3HC4_4
Med21
zf-RING_5
SlyX
TRAF3_RING
RING_XB3-XBAT31
TRAFD1-XIAF1_ZnF
DUF16
zf-TRAF_2
zf-RING_11
U-box
ATG16
PUMA_CC
CENP-F_leu_zip
PspA_IM30
Cast
Tropomyosin
DUF7310
DUF4094
DUF948
UPF0242
ADIP
TMF_DNA_bd
DUF1664
Motif
Other DBs
NCBI-GeneID:
106556967
NCBI-ProteinID:
XP_013931512
UniProt:
A0A6I9Z6H4
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MSLLHSSTSFEINDQESDCCAAMASACSAGTKEESFTAPISNGTGGTLSNSFMEETQGYD
VEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIVKSLRDAGHKCPIDNEMLLENHL
FPDNFAKREILSLKVKCPNKGCSQKMELRHLEDHQLHCGFASEKCSQCQGIFLKNQLQEH
IQLECPRRQIACPNCAMCMPYEEKMVHDEICLLANVFCEYCNTLLIREQLPNHYDNDCPT
APVPCTFSAFGCLEKMQRNDLARHMQEFTQVHMRMMAQTLRSVSVTTPTSTNFSGTLPFD
PSLFSQGMPPSCECSPEVQNFKETIQQLEGRLVRQDHQIRELIAKMETQHSQIGDLKRTI
RTLEEKLADVEAQQCNGIFLWKIENFSVYLKAQEEERPVVIHSPGFYTGKPGYKLCLRLH
IQLPSAQRCANYISLFVHTMQGDYDSHLPWPFQGTIRLSILDQSEGSPRHNHEEVMDTKP
ELLAFQRPMVHRNPKGFGYVTFMQLQALKQRTYIKDDSLLVRCEVLTRLDLTSLRREGFQ
PRSTDGTS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgagtctactacatagtagcacaagttttgaaatcaatgatcaagagagtgactgctgt
gcagccatggccagtgcttgcagtgctgggaccaaggaggaaagcttcactgcccccatc
agcaatggtactggtgggacactttcaaactctttcatggaggaaacccaaggctatgat
gtggagtttgacccaccactggaaagtaaatatgaatgtcctatctgtttaatggctcta
cgggaagcagtacagacgccatgtggacatcgtttttgcaaagcttgcattgtcaaatcc
ttaagagatgcaggtcataaatgtccaatagacaatgaaatgttactagaaaatcacctc
ttccctgataactttgcaaaacgtgaaatcctctcactgaaagtgaaatgtcccaacaaa
ggctgcagtcaaaagatggagctaaggcacttagaggaccatcagctacattgtggattc
gcatcagaaaaatgttctcaatgtcaaggaattttcctgaagaaccagttgcaagaacat
attcagctagaatgtccacggcggcaaattgcttgtccaaattgtgccatgtgtatgcct
tatgaagaaaaaatggttcatgatgaaatatgccttttggcaaatgtcttctgtgaatat
tgtaatacattgctaatcagagaacagctgcctaatcattatgataatgactgccctact
gctccagtaccatgtacctttagtgcatttggatgtctagaaaagatgcagagaaatgat
ttggcacgccacatgcaagaatttactcaggttcatatgagaatgatggctcagactctt
cggagcgttagtgttactactccaacttccacgaatttttctggaactttaccctttgac
ccatcactcttctctcaaggcatgccaccctcgtgtgagtgtagtccagaggtccagaac
ttcaaggagactattcagcaactggaaggtcgcttggtaagacaagatcaccaaattaga
gaactcattgcaaaaatggagacacaacattcccagattggagatctcaaacgcaccatc
cgaactctagaggaaaaacttgctgacgttgaagcccaacaatgtaatggtattttcctg
tggaaaattgaaaatttcagtgtgtacctaaaagcccaggaggaagaaagaccagttgtg
atccatagtccaggtttctacacagggaaaccaggatataaactttgcttgcgtctgcat
atccagttaccaagcgctcaacgttgtgctaattacatttctctttttgttcacaccatg
caaggggactatgacagtcatctcccttggcctttccaaggcaccatacgtctatcaatt
ttggatcagtctgaaggatctccaagacacaaccatgaagaagtaatggataccaagcct
gagttgctagccttccaacgtcctatggtccatcgcaacccaaagggctttggatatgta
acttttatgcagttgcaagccctaaaacaaagaacatacataaaagatgatagtctcttg
gtacggtgtgaagttttaacacgtttggacttaaccagtctccgaagggaaggttttcag
cctcgtagtacagatggaacatcatag
DBGET
integrated database retrieval system
