Telopea speciosissima (New South Wales waratah): 122641975
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Entry
122641975 CDS
T07910
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
122641975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122641975
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
122641975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
TonB_N
KH_6
Motif
Other DBs
NCBI-GeneID:
122641975
NCBI-ProteinID:
XP_043691264
LinkDB
All DBs
Position
10:55573486..55613921
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AA seq
913 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIADVIEEEPSEGVNGVLLPIDVSKPNPNNMEFDNLYLDMNGII
HPCFHPEGKLAPATYDDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAEAEEERLRKEFEAGGRILSPKEKAETSDSNVITPGTQFMAVLSVALQYYIQ
CRMNHNAGWSFIKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVISLPGQQEKCFICGQVGHLAAECRGQGADLNEKAINDTPIHKKKY
QFLNIWVLREYLQYDLEIPNPPFELNFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAIN
LLMSVYKKEFHAMGGYLTDAGEVLLERVEHFIQSAAVYEDQIFQKRARIQKAHENNEEMK
LKMRRENSEEPQMLAVDKVKLGEPGYKERYYVEKFEISDPKKIDEVKKDVVLKYVEGLCW
VMRYYYQGVCSWLWYYPYHYAPFASDLKDLADLEITFFRGEPFKPFDQLMGTLPAASSNS
LPEHFRALMTDPSSPISSFYPADFEIDMNGKRFAWQGVAKLQFIDERKLLAATKKLEETL
TEEEKARNRIMYDLLYVYESHPLARRILPCYVFCYQSAPSEIFPAYQIDTDISGGMNGYI
WLCERNGYKRVVPSPVKGLPNIENNRVLNATYLNPQPHNHIPEPPEGVKMPKKIIKPYDV
KPFPVLWHEDNSGRRSQFRERPLVPRAISGPLLGEAAHRLLKNTLQIKANTATSSALLDA
PLKRNFHNQMVNRPWPARPSGYERGFPQDLNYYNAHYNPPRGTITSSRTGPNFHEMQGNR
QNFRAQDGQSYQEQYNLNTGLAAVTIEEGVRSWPHNGVQNAEYSPNLHQSTDWNLGSPPL
PPTNWIDRQRPRN
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttctacagatggctcgccgatcgataccctctatcaattgccgat
gtaatcgaagaagaaccttcggagggcgtgaatggcgtccttttacctatcgacgtctct
aagccaaatccgaacaacatggaattcgataacctttacttagacatgaatgggattatt
catccttgttttcaccctgaaggcaagcttgctcctgccacctatgatgatgtatttaaa
tcaatatttgattacattgatcatctattttcattggtccgcccaagaaagctgctttac
atggcaatagatggagttgcaccaagagctaaaatgaatcagcagcgtacacggcgcttc
agagctgcaaaagatgctgctgaggctgaagctgaagaggaaagactgaggaaggagttt
gaagctggggggagaattctgagtcctaaggagaaggctgaaacatcagactcaaatgtc
attactccaggcactcaatttatggctgtgttgtctgtagctcttcaatattacattcag
tgtaggatgaaccacaacgctggttggagtttcattaaggttattctctctgattcaaac
gttcctggtgagggtgaacacaaaatcatgtcctacatccggttacaacgtaaccttcct
ggttttaatccaaacacgcggcattgtctatatggtttggatgcagatctgatcatgctg
tctttagctactcatgaggttcacttctcaattttgagagaggtgatctccctgccagga
caacaggagaaatgctttatatgtggtcaagtcggtcatctggctgctgagtgccgtgga
caaggtgcagatttaaatgagaaggcaataaatgacaccccaattcacaaaaagaaatat
cagttcctcaatatctgggtgttgcgagaatatttacagtatgatttagagattcccaac
cctccatttgagttaaactttgaacgagtagtggatgattttgtttttctctgtttcttt
gtcggcaatgactttcttccacacatgccaacattggaaatccgtgagggtgccattaat
ctactgatgtctgtctacaaaaaagagtttcatgctatgggtggttatcttacagacgcg
ggtgaggtcttattggaaagggtggaacattttattcaatcagctgcagtatacgaggac
caaatctttcagaagcgagctcgtattcaaaaggcacatgagaataatgaagagatgaag
cttaaaatgagaagagagaattccgaggagcctcagatgttggctgtggataaggtgaaa
ctaggggagccaggttacaaagagagatactatgttgagaaatttgaaatatcagaccca
aagaaaattgatgaagttaaaaaagatgttgtcttgaagtacgtggaaggtctatgctgg
gtcatgcggtattactaccaaggtgtctgctcttggctatggtactatccataccactat
gctccttttgcttctgatcttaaagatttggcagatctagagatcacatttttccgggga
gaaccatttaaaccctttgatcagcttatgggaacattaccagctgcaagttccaattct
ctgcctgaacatttcagggcattgatgactgacccttcatcaccaattagttccttctat
cctgccgattttgagattgacatgaatggtaaacgctttgcatggcagggcgttgcaaag
ctgcagttcatcgatgagagaaagttgcttgctgcaacaaagaagcttgaggaaactttg
acggaagaagaaaaggctcgaaatagaattatgtatgatttgctatatgtctatgagagc
catcctttagcaaggcgtatccttccatgctacgtattctgttatcagtcagctccttca
gaaatattccccgcctatcaaattgacacagatataagcggcggaatgaatggctacatt
tggttatgtgaaagaaatgggtataagagagtagttccttccccagtcaaggggttgcca
aacattgaaaacaatcgtgtcctcaatgctacttatcttaatcctcaaccccataatcac
attccagaacctccggaaggtgtaaaaatgcccaaaaagattataaaaccttacgacgta
aaaccattccccgtgttatggcatgaagacaacagtggacggcgttcacaattcagagag
aggccacttgtaccacgggctatatctggaccccttttgggagaagcagctcatcggctg
cttaaaaacacacttcaaatcaaagctaacaccgcgacttcctctgcattgttggatgcc
ccacttaagaggaattttcataaccagatggtcaataggccttggccagctagaccttct
ggatatgaaagaggatttcctcaggacctgaattattacaatgcacattacaaccctcct
cgaggcaccattactagctcaagaacaggcccaaatttccatgagatgcaaggcaacaga
cagaattttagggcacaagatgggcaatcgtatcaagaacagtataacttgaatacaggg
ctggctgccgtgacgattgaagaaggggtgagatcttggccacataatggggtgcaaaat
gctgaatattcaccaaacctacaccagtcaactgattggaatttggggtccccaccattg
ccaccgaccaattggattgacaggcaacgacctagaaattaa
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