Telopea speciosissima (New South Wales waratah): 122651977
Help
Entry
122651977 CDS
T07910
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
122651977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122651977
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
122651977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Aegerolysin
DUF2316
Motif
Other DBs
NCBI-GeneID:
122651977
NCBI-ProteinID:
XP_043701517
LinkDB
All DBs
Position
1:complement(59597027..59657239)
Genome browser
AA seq
1323 aa
AA seq
DB search
MGIPSFYRWLVQKYPRSVSEVIEEVPPVVNGVRVPIDTSLPNPNGVEFDNLYLDMNGIIH
PCFHPEDQPAPKTYEEVFKNVFKYIDRIFSIVRPRKLLYMAVDGVAPRAKMNQQRARRFR
AAKDAADKAAEAERLKTKTMDSNVITPGTEFMALLSSALQYYIHLRMNTDPGWRGIKVIL
SDANVPGEGEHKIMSYIRLQRSLPGFDPNTRHCLYGLDADLIMLALATHEVHFSILREDV
TKFRVKDTNAKNGKWSSQRDQKRQRKKLTQSKVNSVNINDGISTLQFQFLNIWILRDYLE
HDIKIPDQTVKADFERLIDDFVFMCLFAGNDFLPHVPSLEISEGAIDLLMAVYKREFVRM
GGYLTNSFEVNLERVELYLKAVGSHESAIFRKRSQTQEGNRKHGRSSDSSKLPHAKRLKN
SESLLSSSKVDKKKTPISISKETSYDANAVVDKVKLGDKGWKERFYTEKFETKTKDDQEK
IRSHAVLKYIEGICWVMHYYYQGVCSWQWFYPYHYGPFASDFYALGQLEIQFTLGEPFKP
LNQLMSVLPAASAHALPLFYRVLMTDSSSPISDFYPTDFELDMNGKRFAWQAVCKLPFIM
ESRLLAETAKVEHTLTDEEKQRNSLGMDRLFVHISHPLTVKIFSLCEQNRDHPVLTNAEV
EHKIDPKLSNGMNGYIYISDKPVLPPEIYSPIEDMEMITKNETIFVFYKYPAFHPHIPRL
PEGVMIPVKSIRSCDVFSTPMLWHEKLAAFGRRFSERPIPKSISGPCLAKSARRLVSEHY
LMKQRTVGSTEPEGHVTADGSGCHASSQATICKKELDDGRKSCSSGSKPRKGKWPMKQNG
LVGSTELKGHLTTYSSHQPNSKETVRGERSQETNVLVSESYLIGRQQVMGPAESNSHFTT
GSSACQLNSDETVYEKEGDDIKQSCITGSEPHKKKKVKKHRSSIANGLQSESCPMKQQQG
MGSTELDDCITKDHSTSQQSLKETADEQEPDNGEKSCFNVNARKERVHEKELNCGEASSI
KLSKSQKNRRARKRYKELRVLQSQGAEEANCDQSRTNIDVAIDCSVHKANSKERILEERP
EPCEQSCLNGSRSLKRKRVKKKHQNSVANEIVSESCPIGHQVVMGAAEYDGTTGGSVCQP
NSKETVNEKELNHVEASSIKLKTVHEKELNHVEASSIKLSKSQKNRRARKRCKELRVLQS
QGAEEANCDQSHTNIDVAMDCSIHQASSKGTVLEKRPEPCEQSCLNGSRSPKRKRVKKKR
QNTMGNEIVSESCPIGHQVVMGAAELNGYVATRGSLCRPNSEKTVNEKELNHGEASSIKV
SRS
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgggaattccttcattctatagatggcttgtccaaaaatacccgcgttcagtctcagaa
gtcatagaagaagttcctcccgtcgttaatggagttcgtgtaccgattgatacgagcctt
ccgaatccgaatggtgtggaatttgacaatctctacctcgacatgaatggcattattcac
ccctgtttccatccagaggaccagccggcaccgaagacgtatgaagaggttttcaagaat
gtttttaaatacattgatcgcattttctcaattgttcgaccgcgtaaacttctctacatg
gcagttgatggtgttgcaccacgggctaagatgaatcaacagcgtgcaaggagattcaga
gctgctaaagatgcggcagataaagctgctgaggcagaaaggctgaaaactaagacaatg
gattcgaatgtaatcacacccggaacggaattcatggcattactgtcttcggctcttcaa
tattacatacacctaagaatgaacacagatccagggtggcggggcatcaaggtcattctt
tcggatgcgaatgttcccggtgagggggagcacaagattatgtcttacattcgcttgcaa
aggagcctgccaggatttgaccctaacacacgacattgtttgtatggcttagatgcagac
ttaatcatgcttgctttggctacccacgaagtacacttttcgattctgagagaggatgtc
actaagtttagggtaaaagatacgaatgcaaaaaatgggaagtggtcatcacaaagggat
cagaagagacagcgcaagaagttgacgcaatcgaaagtgaatagtgtgaatataaatgat
ggcatctcgacactgcaattccagttcctcaatatttggattctcagggactacttggaa
catgacataaaaataccagatcaaaccgtgaaggcagactttgagcgtcttattgatgat
tttgtttttatgtgtttgtttgctggaaatgattttctacctcatgtcccgtcattggaa
atctctgagggggcgattgacctgcttatggctgtctataaaagggaatttgtacgaatg
ggaggttatctaacaaattcttttgaggtaaatcttgaacgtgtggagctctacctaaaa
gctgtgggatcccatgagagtgcaatttttaggaaacgcagtcagacacaggagggaaat
aggaagcatggcagaagcagcgactcttctaaactacctcatgctaagcgactaaagaac
tctgagagtttattgtcctcttctaaggttgataagaagaagactccaatctccatcagt
aaggaaacatcttacgacgctaatgcagtggttgacaaggttaaactgggagataaagga
tggaaagaaaggttttatactgagaagtttgaaacaaagactaaagatgaccaggaaaaa
attcgaagtcatgcggttttaaaatatattgaaggaatttgctgggtcatgcattattac
tatcaaggagtatgctcctggcaatggttctatccttaccattatggtccatttgcttcg
gatttttatgctcttggtcagttggagatccaattcacacttggtgaacccttcaagcca
cttaatcagttaatgagcgtattgcctgccgcaagtgcacatgcactgcctttgttttac
agggtattgatgacagattcgtcatcacctatttcagatttttatcccacagattttgag
cttgacatgaatggaaagcgatttgcatggcaggctgtctgtaaattaccgtttattatg
gaatctcgtcttcttgctgagactgcaaaggtggaacacaccttaacggatgaggaaaaa
cagagaaacagtttgggaatggataggctctttgttcacatttcacatcctttaacagtg
aagatcttctcactttgtgaacaaaatagagatcatccagtgttgactaatgctgaagtc
gaacacaaaattgacccaaaattgagcaatggtatgaacgggtacatatatatttctgat
aagccagtgttgcctcctgaaatctattcaccaattgaggacatggagatgatcacaaag
aatgaaaccatttttgttttttataagtaccccgcctttcatcctcacattccaaggcta
ccagagggggttatgattcctgtgaagtcgatccgcagctgtgatgttttctctactcca
atgttatggcatgagaagttggctgcttttggacgtagattttctgaaagacccattcca
aagtccatctcaggcccttgtctggcaaaatcagcccgccggcttgtatcagagcattat
ctcatgaagcagagaactgtgggatcaacagaacccgagggccatgtcactgctgatggc
tctggctgtcacgctagctcccaagcgacaatttgcaagaaagagcttgatgatggtagg
aaaagttgctcaagtggaagtaaaccacgaaaaggaaaatggccaatgaagcagaacgga
cttgtgggctctacagaactcaaaggccatctcactacatattcctcgcatcagccaaat
tccaaagagacagttcgaggtgaaagaagtcaggaaaccaatgtgcttgtatcagaatct
tatcttattgggcggcaacaagtcatgggtcctgcagaatccaattcccatttcaccact
ggcagctcggcctgtcagcttaattccgatgagacagtttatgagaaagagggtgatgac
attaaacaaagttgcataactgggagtgaacctcataaaaagaaaaaggtgaagaaacac
cgaagctcaattgccaatggacttcaatcagaatcttgtcccatgaagcagcaacaaggc
atgggatctacagaactcgatgactgcataactaaagatcactccacaagccagcaaagc
ttgaaagagacagctgatgagcaagagcctgataatggtgaaaaaagttgcttcaatgtc
aatgctaggaaagagagagttcatgagaaagagctcaattgtggtgaagcaagttctatc
aaactaagtaaatctcagaagaaccgacgagccaggaaacgttacaaggaactccgagta
ctccaaagtcaaggggcagaagaagctaattgtgatcaaagtcgcaccaatattgatgtt
gccatagattgctccgtacataaggcaaactctaaagagagaattcttgaggaaaggcct
gaaccttgtgaacaaagttgcctaaatgggagtagatctctgaaaagaaagagggtgaag
aagaaacaccaaaactcagtggccaatgaaattgtatcagaatcttgtcccatagggcac
caagttgtcatgggggctgcagaatacgatggcactacaggtggctctgtgtgtcagccg
aattccaaagagacagttaatgagaaagagctcaatcacgttgaagcaagttctatcaaa
ctaaagacagttcatgagaaagagctcaatcacgttgaagcaagttctatcaaactaagt
aaatctcagaagaaccgacgagctaggaaacgttgcaaggaactccgagtactccaaagt
caaggggcagaagaagctaattgtgatcaaagtcacaccaatattgatgttgccatggat
tgctccatacatcaggcaagctctaaagggacagttcttgagaaaagacctgaaccttgt
gagcaaagttgcctaaatgggagtagatctccgaaaagaaagagggtgaagaagaaacgc
caaaacacaatgggcaatgaaattgtttcagaatcttgtcccatagggcaccaagttgtc
atgggggctgcagaactcaatggctatgtcgctacacgtggctctttgtgtcggccaaat
tccgaaaagacagttaacgagaaagagctcaatcatggtgaagcaagttctatcaaagta
agtagatcttag
DBGET
integrated database retrieval system
