KEGG   Telopea speciosissima (New South Wales waratah): 122666222
Entry
122666222         CDS       T07910                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122666222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tss03021]
    122666222
Enzymes [BR:tss01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122666222
Transcription machinery [BR:tss03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122666222
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 122666222
NCBI-ProteinID: XP_043718308
LinkDB
Position
6:60497314..60557036
AA seq 1497 aa
MDDEVFLEQLVPSGVLSGIRFDVLTAAQIEKCSVKTVAAGNEFTDPRFGVPNPSSQCSTC
GAKDLKHCDGHTGIIKFPIDILHPYFISETVQILNSFCPVCRSLRQNLHIKGLDTVSSRK
LTATSGQYKGCKYCMKPDFLNCPTQGSKYGYPRMKFKVASKDKCMKNTSIIVEVNEKSNK
KFQNKNPSQVLPVDYWDFIHKDPQQEAQTMKWNQRVLSTAQVFYLLKDIDNEFIGNFVLR
PESLFLSCFPVTPNCHRVMETPHLFSNGHQYDFDERTKAYRGLLIDFKGQSDILGSRVCD
FLNVSRLHTAKSSSTDSASMKSGLKWMKEVVLGKRSDYVFRMTVVGDPKISLGEIGIPRD
ISESLSISEHLNSLNWEKLHIYCNLRLLQKGEFFVRRKGVLVRLCCTRELKIGDTVYRHL
DEGDVVLINRPPSVHQHSLIALSVRVLPINSVVSINPLCCSPLRGDFDGDCLHGYIAQAI
DSRVELRELVSLERQLVNGQNGRNLLSLSQDSLTAAHVILNKGVFMNKIEMQQVGMSCLH
RWLCPAILKVPSSQSCVWTGKQLFSMLLPERFDFDSPSSGVRIRGGELLSSFDGSAWLRD
TDDNIFSSLVKCCGSKSLDLLFTAQEALCEWISTRGFSVSLSDFYFCSDSYSRKNMNDEI
KCALQEAEQVCQVKQLMVDPALEYFLKHGEGNQNPEFLNMEHKCHLNQKSGVLNKVLVGA
FREVFHDIQNLIYRYSSKGNSLLIMVKAGSKGNLLKLAQQGLCLGLQQPSVPLSFKFPDR
LSCYMWNYQKANETSVRNESKVPCAVVESSFLDGLNPLECFVHSVACRDNSFGENADLPG
TLTRKLMFYMRDLYLAYDGTVRSAYGNQLVQFSYDVSKNVSVKDNNRSGMFGEHSYAVDG
FGGQPVGSLAACSISEAAYSALDQPMGTLEMSPMQNLKKVLECGPRKGMVDRTISLFLSN
KLRRWNYGLEYGALEVKSHLEAVLFSDVVSTAMIVFSPAGRQKTHFSPWVCHFHICEENM
KRRQLNIDSIKVALIRNHTAKLAKVGMLPNLQILSRNCSVADALKENVGSFCITAAVEIS
NDSSVELDDVRDFLIPILLGTVVKGFLEFKNVDIMWSNLPKASKSDKGSFGELYLRISMS
ESGKKAQIWSILQDACLPIMDLIDWERSHPDNIYDICCTHGIDSALEYFITSLRSALSDV
GKTVLPEHLLLIANSLSFTGQFLGLSAPGMKKQRHLTSISSPVMHACFSDPGACFIKAAK
EGARDDILGTLDALAWGKKVPIGTGGHFDILYSGEGHKLDKPQNIYDILCRQVKSQWENT
ENRVSRDHKITELSSSQLKLFQTLKDHKSICKKWDSPSLSRSDNPPHKGNKSLECILDSV
LRNFYSADDILRMNISLKNILHKKYKIDEYLNEGDKSILLTALFFHPHRDQKMGSGLQDI
KVGYHSLHRQSRCFILVRMDGTIEDFSYRKCILAALQKISPKQATRYEMKMLQSCKL
NT seq 4494 nt   +upstreamnt  +downstreamnt
atggatgatgaagtgtttctggagcagctggtgccgtcaggggtattgagtggaattagg
tttgatgttttgactgctgcacaaatagaaaaatgctctgtgaaaactgtagctgcaggc
aatgagtttactgatccaaggtttggggttccgaatccatcctctcagtgctctacgtgt
ggtgccaaagatctaaaacactgtgatggtcatacagggataattaagttcccaattgac
attttgcatccatattttatctcagaaacagtgcaaattctcaattcattttgtccagta
tgtaggtcacttagacaaaatctgcatatcaagggtttagatacggtatcaagtagaaaa
ttgacagcaacaagtggtcaatacaagggctgcaaatattgtatgaaacccgatttcttg
aattgtccaacacagggttcaaaatatgggtacccgcgtatgaaatttaaagttgcttca
aaagataaatgtatgaagaatacttcaattattgttgaagtaaatgagaagtccaacaag
aagtttcaaaataaaaatcccagtcaagtacttccagtggattattgggattttatacac
aaagatccacagcaagaagcccaaacaatgaaatggaaccaaagagtgctgtctacagcc
caggttttttatttgttgaaagatattgacaatgagttcataggaaattttgttctaaga
ccagaatcacttttcctttcttgttttcctgttacacccaactgtcatcgcgtaatggaa
acaccgcatttattctccaatgggcatcaatatgattttgatgaacgcaccaaagcttat
agagggctgctgattgacttcaaagggcagtcagatatacttggttcacgtgtttgtgac
ttcctaaatgtttccaggttgcacactgctaaatcatcaagcacagattctgcttccatg
aagtctggtttgaaatggatgaaagaagttgttcttgggaaacgatcagattatgtgttc
cgtatgactgttgttggtgatccaaagatttcactgggtgaaattggaataccacgggac
atttcagagagtttgtcaatttcggaacacttaaattcactgaattgggagaagttacac
atctactgtaacttacgtctccttcaaaagggagagttctttgttaggaggaagggtgtt
ctggttcgtttatgttgtacccgtgaacttaagataggggacactgtatatagacatcta
gatgagggagatgttgttttaataaataggcctccatcggtgcatcagcactccctaatt
gctttatcagttagggtccttccaattaattcggttgtttccataaatcctctctgttgt
tcccccctacgtggggattttgatggagactgtcttcatgggtatattgcgcaagccatt
gactctagagttgagttaagagagcttgtctctttagagaggcagttagttaatggacaa
aatggtcgaaacttgctgtcactaagtcaagatagtttaactgctgctcatgtgatcctg
aataagggtgtttttatgaacaagattgaaatgcagcaagttggaatgtcgtgccttcat
cggtggctctgtcctgctattctcaaagtaccatcatcccagtcttgtgtttggactggt
aagcagttgttcagcatgctcctccctgagcgctttgactttgattccccatcaagtggt
gtccgaatcagaggaggagaacttttgtcttcctttgatggatctgcttggttacgagat
acagatgacaatattttctctagtcttgttaaatgttgcggaagtaaaagtcttgattta
ctgttcactgctcaggaagctctttgtgagtggatatcaacgaggggatttagtgtctct
ttgtctgatttttacttttgctctgattcatactcccggaaaaatatgaatgatgagata
aagtgtgctctacaggaagcagagcaggtctgtcaagtcaaacaattgatggtggatcct
gccttggagtactttctcaagcatggtgaaggaaaccaaaatcccgagtttctcaacatg
gagcacaaatgtcacttaaaccagaagtctggtgtcttgaataaagttttagttggtgct
tttagagaagtttttcatgacattcagaacctaatctatcggtattccagtaagggaaat
tcattgttgatcatggtaaaggctggaagcaagggtaatcttctgaaacttgctcagcaa
ggcctgtgccttggtttgcagcagccttcagttcccttatctttcaaatttcctgacagg
ctttcttgctatatgtggaattatcagaaggctaatgaaacttctgtacgtaatgaatct
aaagttccctgtgctgtggttgaaagttcttttcttgatggcctgaacccattagaatgc
tttgttcactcggtagcatgcagagataattcttttggtgagaatgccgatctcccgggt
actttgacaagaaagcttatgttttacatgcgcgatctctatcttgcttatgatggaact
gtgagaagtgcttatgggaatcaacttgttcaattctcttatgatgtttccaagaacgta
tctgttaaggataataatcgtagtgggatgtttggtgagcattcatacgctgtcgatgga
tttggtggtcaacctgttggctctttggctgcttgttccatttcagaagctgcatacagt
gctttggatcaaccaatgggtacccttgaaatgtctcccatgcaaaatctaaagaaggta
ttggaatgtggtccaaggaaaggtatggtagatcgaaccatatcattgtttttgtcgaat
aagctcagaagatggaattatggtttagagtatggagccctagaagttaagagccatctg
gaggcagtattattttcagatgttgtttctactgccatgattgtcttttctccggcagga
cgtcaaaagacacacttcagtccatgggtttgccattttcatatatgtgaggaaaacatg
aagagaagacaactgaatattgactccatcaaagttgctcttataagaaaccacactgca
aagctagccaaagttggtatgcttccaaacttgcagattttgagcaggaattgttcagtt
gctgatgctctgaaggaaaacgttgggagcttttgtatcactgctgcagttgaaatttcc
aatgattcttctgttgaattggatgatgtccgagattttctgataccaattcttcttgga
actgttgttaaaggatttttggagttcaagaacgtcgatattatgtggagtaatctgccc
aaggcatcgaagtccgataaaggttcttttggtgaactttatctaaggatttcaatgtca
gaaagtggcaagaaagcacaaatatggagtattcttcaggatgcatgtcttccaataatg
gatttgattgattgggaacgcagtcacccagacaatatttatgacatatgttgtacccat
ggcatagattctgcattggaatatttcataacaagtttgagatctgcattatctgatgtt
gggaagactgtacttccggaacatttgcttcttattgcaaattctctttcatttactgga
cagtttcttggattgagtgcacctgggatgaagaagcagaggcatttgacatccatctca
tcccctgttatgcacgcatgcttttctgatcctggtgcttgcttcatcaaggctgcaaaa
gaaggggctagggatgatatattggggactttggatgcactggcttggggaaagaaggtt
ccaatcggaaccggtggacattttgatattttatattctggagagggacataaacttgat
aagcctcagaatatctatgacatcttgtgccgccaagtcaaatctcagtgggagaatacg
gagaacagggtatctcgtgatcacaaaattaccgaactgagctctagtcaacttaaactt
tttcaaacactcaaagatcataaaagtatttgcaagaaatgggattctccatcattgtct
agaagtgataatcctccacataaaggaaataaaagtttggaatgcatactagattcagtt
ttaaggaatttctattcggcagatgatattttgaggatgaacatttcattgaagaacatt
ttacataaaaagtacaagattgatgagtacttaaatgaaggagacaaatccatattgttg
acggctttgtttttccaccctcacagagatcaaaagatgggatctggacttcaagacatc
aaggttggataccattcgttgcatcgccagtcacgctgctttattttggttaggatggat
ggtaccatagaagatttttcataccgcaaatgtattctggcggccctgcaaaagatttca
cctaaacaggcaaccagatatgagatgaaaatgctacaatcatgtaaattgtga

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