Telopea speciosissima (New South Wales waratah): 122670926
Help
Entry
122670926 CDS
T07910
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122670926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122670926
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122670926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
Arf
ORC-CDC6-like
AAA_23
AAA
AAA_30
ATP-synt_ab
RsgA_GTPase
AAA_24
nSTAND3
AAA_28
Zeta_toxin
AAA_7
Motif
Other DBs
NCBI-GeneID:
122670926
NCBI-ProteinID:
XP_043723904
LinkDB
All DBs
Position
8:63155943..63159935
Genome browser
AA seq
330 aa
AA seq
DB search
MSEEGEERTPMVEINNLRFTYPGIDGHPPPGSTPLIEDFSLSLLSGQRCLLVGSNGAGKT
TILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWKRDVAFAGFEVPIQMDI
SAEKMIFGVSGIDPQRRAELIKVLDVDLSWRMHKASDGQRRRVQICMGLLKPFKVLLLDE
ITVDLDVLGRADLLKFLRKECEERGATIIYATHIFDGLEDWPSHIVYVAHGKLQLAMPMQ
KVKEISSLSLMRTVESWLRKERDEERKRRKERKASGYSEFEKQVEGSRVTGDPARSVARA
MNNGWAAGRLHSTVAGQENFFYSSNSILRQ
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaggaaggggaggagaggacaccaatggtggagatcaacaatctcaggttcacg
tatcccggcatcgatggccatcctcctcccggatcaacccctctgatcgaagacttctct
ctgtctctcctttccggccaacgttgccttctcgtcggttctaatggagctggaaaaaca
acgattcttaagatactgggagggaaacacatggtggagcctcacatggttcgtgttctt
ggcagatccgccttccacgacaccgccttgacgtcgtcgggcgatctctgttatctcggc
ggagagtggaagcgagatgttgcatttgctggctttgaggttcccattcaaatggatatt
tctgcagagaaaatgatatttggggtttcaggtatcgatcctcaaaggagagctgaactc
attaaggtgttagatgttgacctgtcatggagaatgcacaaagcatctgatggtcagaga
agacgggtacaaatttgtatgggtctcctcaaaccatttaaggttcttcttcttgatgag
ataacagttgaccttgatgtgctaggaagggctgaccttttgaaattcctcagaaaggaa
tgtgaagagcgaggtgctacaattatatatgcaacccatatattcgacggtcttgaggat
tggccatcacatattgtttatgttgcacatgggaagttacaattagcaatgccaatgcaa
aaggttaaggagattagcagtttgtctcttatgagaaccgtggagagttggctgaggaag
gagagggatgaagagagaaagagaaggaaagaaaggaaggcaagtggttattcagaattt
gaaaagcaagtcgagggaagtcgagtgactggggaccctgctcgtagtgttgctcgtgca
atgaacaatggttgggcggcagggaggcttcactctactgtagcaggtcaggagaatttc
ttctacagctcaaacagcattctgagacagtag
DBGET
integrated database retrieval system
