Trachemys scripta elegans (red-eared slider): 117869233
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Entry
117869233 CDS
T07347
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117869233 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117869233 (EFTUD2)
Spliceosome [BR:
tst03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117869233 (EFTUD2)
Complex C
U5 SnRNP specific factors
117869233 (EFTUD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
117869233
NCBI-ProteinID:
XP_034611799
LinkDB
All DBs
Position
23:complement(588895..>622718)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGREAKDLDELDDDDDDDDIGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSFLFNVMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWILIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacacagacctgtatgatgagtttgggaattacattgggccagagctcgactctgac
gatgatgatgatgaactgggcagagaggccaaggatcttgatgagcttgatgatgatgat
gatgacgatgatataggagatcatgatgaagatcatcctggaatggaggtggtactgcat
gaggataagaaatactatccgactgctgaagaggtttatggacctgaggtagagaccata
gtgcaggaggaagatacccagcctctcactgagcctattattaaacctgtgaaaactaag
aaattctccctgatggagcagacgttgcctgtcactgtatatgaaatggatttcctggca
gatctgatggacaactctgagctgattcggaatgtgaccctgtgcgggcatctccaccat
ggcaagacttgttttgtggattgcctgatagagcagacgcacccagagatcaggaagcgc
tacgaccaggatctttgctacactgacatactgttcacggagcaagagaggggtgttggc
atcaagagtaccccagtgactgtggttctaccagacaccaaggggaaatcctttctcttc
aacgtcatggacacaccaggccatgtgaacttttctgatgaggttactgccggacttcgt
atttcggacggagttgtgcttttcattgatgcggccgagggggttatgctgaacacagag
aggctgatcaaacacgcagtgcaggagaggctggcagtgaccgtgtgcattaataagata
gatcggctgatcctggagctgaagcttccccccaccgatgcctattacaaactccgacac
atagtagatgaggtcaacggcttgatcagcatgtattccactgacgagaacctgatcctc
tcccctcttttggggaacgtctgcttctccagttcccagtacagcatctgcttcacgctt
ggctcctttgcaaagatttatgcagacacgtttggagacatcaattaccaggagtttgca
aagcggctttggggtgacatctacttcaaccccaagacacgaaagttcactaaaaaggcc
ccgaccagcagttcccagcggagctttgtggagtttgtcctagagcccctgtacaagatc
ctggcgcaggtggttggtgatgtggacaccaccctcccccgcactctggatgagctgggc
atccacctgaccaaagaggagctgaagctaaacattcgacccctgctaaggcttgtctgc
aagaagttcttcggggagttcacaggctttgtggacatgtgtgtgcagcacattccctcc
ccaaaggtgggagccaagaccaaaatcgagcacacttacaccggcggcgtcgactcagac
ctgggggaggccatgagcgagtgtgaccctgatggtccactaatgtgtcacaccacgaaa
atgtacagcacagacgacggggtccagttccacgcctttggcagggtgctgagtgggacc
atccatgcagggcagcccgtgaaggtactgggagaaaactacacgttggaggatgaagag
gattcccagatctgcactgtggggcggctctggatctcggtggcaagataccacatagag
gtgaaccgagtccctgccggcaactggatccttatagagggggtggaccagcccattgtg
aagactgcaaccatcactgagcctagaggcaacgaggaggctcagatcttccgtccattg
aagttcaacaccacgtctgtcatcaaaatagccgtggagccagtcaacccttcggagctc
cctaaaatgttggatggcctgcggaaagtcaacaagagctacccgtcgctcaccaccaag
gtggaagaatctggggagcacgtgatcctggggacgggggagctgtacctggactgtgtg
atgcatgacttacggaagatgtattcagagattgatatcaaggttgctgatccggttgtg
acgttctgtgagactgttgtggaaacttcctccctgaagtgttttgctgagacacccaat
aagaagaacaagatcacaatgattgctgagccactggagaaggggctcgcggaggacatt
gagaacgaggtggtccagatcacctggaacaggaagaagctgggcgaattcttccagacc
aagtatgactgggatttgctggctgcccgctccatctgggcctttgggccagacgctact
ggcccaaacattctggtagatgacacgctgccctcggaggtggataaggccctgctgggc
tctgtgaaggacagcatcgtacaggggttccagtggggcacaagggaaggacccctctgt
gatgagttgatccgcaatgtgaagtttaagatcctggatgccgtgatcgctcaggagccg
ctgcaccggggaggagggcagattatcccaacggcgaggagggttgtgtactccgccttc
ctcatggccactcctcggctgatggaaccgtactactttgtggaggtccaggcccctgct
gattgtgtgtctgcagtgtacactgtgctggcccggcggagaggtcatgtgactcaggac
gctccaatcccaggctcccccctttacaccatcaaagcctttatcccagccattgactcg
tttgggtttgagactgacttgaggactcacacgcagggacaggctttctctctgtctgtc
ttccaccattggcagatagtgcctggagaccccttggacaagagtatcgtcatccggccc
ttggagccccagccagcacctcacctggccagagagttcatgatcaagaccaggcgcaga
aagggcttgagcgaggacgtgagcatcagcaagttcttcgacgaccctatgttgctggag
ctggccaagcaggatgttgttctgaactaccccatgtga
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