Trachemys scripta elegans (red-eared slider): 117869319
Help
Entry
117869319 CDS
T07347
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03440
Homologous recombination
tst03460
Fanconi anemia pathway
tst04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117869319 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
117869319 (BRCA1)
03460 Fanconi anemia pathway
117869319 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tst01009
]
117869319 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117869319 (BRCA1)
03036 Chromosome and associated proteins [BR:
tst03036
]
117869319 (BRCA1)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117869319 (BRCA1)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117869319 (BRCA1)
Protein phosphatases and associated proteins [BR:
tst01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117869319 (BRCA1)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117869319 (BRCA1)
Multi subunit type E3
BRCC complex
117869319 (BRCA1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117869319 (BRCA1)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117869319 (BRCA1)
BRCA1-A complex
117869319 (BRCA1)
BRCA1-B complex
117869319 (BRCA1)
BRCA1-C complex
117869319 (BRCA1)
BRCA complex
117869319 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
117869319 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
BRCT_2
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_5
zf-Nse
BRCT_3
zf-RING_6
zf-RING_10
zf-MIZ
zf-ANAPC11
U-box
Prok-RING_4
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
117869319
NCBI-ProteinID:
XP_034611961
LinkDB
All DBs
Position
23:complement(15498966..15546947)
Genome browser
AA seq
1904 aa
AA seq
DB search
MDSSVAAIGDVQNVLLAMQKNLECPICLELIKEPVSTKCDHIFCRFCMFKLLSKKKKGPA
QCPLCKTEVTKRSLQENPRFKQLIEGLLETIHAFERDTGIKFLNSQDFSKKPLETNSTEL
LWKEGSIIQSKGYRNRQKRIQEQENPTLEANAGAQVADNMVRRSSLRNKRQKCESGKAVY
IEFGSDSSEDLLFKKAGGGGMGDKGFQTPPQKGECEEELKYAEKESESPYNMWPIKSDAG
EILSSDILGECGVSEEDSKGTGNGIGDLEAAQVNVADGHLKESQGISASNSQAEQCDRTA
NSSSLLNEDTSLFHSAEEMDVGETRFSSKNKESGLAHSSENQLDKSKKTGNGVQHTEAVE
TCQPESNSLHEREPASESLLQLKTLHGNPLSQVSGKRLKRSIQKVNEWFSKSNEMLSSGS
SQDAPAGAADTEDADSYLSDRESCISEKTDLMVNRTEVVVGCENDRSLSKSIVHNIEDKI
FGKTYKRERKSTPLVHTREMPRSPKVEDVTTEVKPSNNSGTSKLKRKRKTASDLQPVDFI
KKRDEKDLKKHSEGVNQCLVSRNTERKKGGEGSTVVNGSPMGVKNGDNISAELPLREGKS
ILKNDTEKVACNSTDRKPAQNTCDRKSTKKMRSSQTKRSRHSSRPVCALQLVVDRNASCP
DQTELQIDSYPSSEEPRKVDSEKKRVRRSRRLQLLTEKMTKETRRRSEPNEGARKHASES
KDSSSGLQRNVLVHVPECKGPDEQQDVPNHTIPLSDTDLRGNDLQADKTRPDPENCSDGM
QTGKGLLYVEMSVEDLNACSVVPDTDSQVSENQGSHSLLQPHSTNVDQAACPVQNLSENN
QCAAIEPKKKELCACSPKTNRHCTENDLERFRNPKSHEAKIISELNTETEDSELDTQYLR
NMFRHSKRLSFTLHPSPVKESVTESTASETLRKSGATCVEYRHKNRDLKNEPPYVKKTVG
LDEVCEREEPKTCESAKGISGHSPGTHFSRDTDYGHVSDDGKTVSQIPDQVQLFSPPRAA
TAKIKSRGRLQKRRQPKEKRISSEMVIESQLSENLNKSNGSLGDRSNIEERIFQITDLST
VNETGSNQGVKAEEAENKGPVLNLQPKPVLVYPVVCQQSPAEFSSKVIEKNSYEGECKQV
KSDEEQVSQIASVGVPECLISEETLEQSTEDTSGFPLLSETPDGLLCSAGDVKANISICE
IDRKEISAVFVKNGQNASLRELDSGSSSSKSRSQNFVREPRRPAGKLQSSEEDSSEDEEL
PCFQALIFGKSASTPLQPTEQIISTVGSSSPAEILALLNHSSGNDKAVQKTPGVLSRDTC
VSPSQESECSVNLFSSQSNMSEDSTNRPQELKKPVTFAPCSKEMSSFNGSREASPNGNEE
LTGRKTDLEDGHQRDQNVQPNLGEASGYDSEASHPGDSSGLSSQGEILTTQQKDAMQNSL
KKLQQEMAVLEAVLEEHGSQGSEFPPPPCDPPHSRVEGTLTVRQLRPARGTALISEVNLE
NHKISSSKGLSSDGFHVMPSDHSNINNKELEEEGSRSPALQLSHPKSHLLKKEALEQGHW
CPRLWKARTHSQEGTLQRVGVAELLEEEAMKQCNQCRIEPENAAEQEFGTKINSAAVPCE
NVRRTPNSSPLKFSERLTHCQTAESTNSAAVSWHVANGKSTQGCKQERRAFSSASALHTG
VVKENAKSPVVTCGRQMSIVASGLNQSELLLVQKFARKTQSTLSNQITEGTTHVIMKTDM
ELVCERTLKYFLGIAGRKWVVSYEWIVQSFKEGRILDEYDFEVRGDVINGRNHQGPKRAR
RSQAGKLFKDFEICCYGPFTDMRTGDLERMVELCGASVVKQPHLFTHKANSTAVIVVQPD
AWLENAGYRAIQQKCTAVVTREWVLDSVACYECQEFDTYLVSQS
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggactcgtctgtggctgccattggagatgtgcaaaatgtgcttttggctatgcagaag
aacttggagtgcccaatatgtttggagttgataaaagaaccagtctcaacaaaatgtgac
catatattctgcagattctgtatgtttaaacttctcagcaaaaagaaaaaaggcccagct
cagtgtccactgtgtaagactgaggttaccaaaagaagtcttcaggaaaatccaagattt
aagcagctaattgaagggctactggaaactatccatgcttttgaacgtgacactggaatc
aagtttttaaacagtcaggatttttctaaaaaacctctagaaaccaattctactgagctc
ctgtggaaggaaggttccattattcaaagtaagggctacagaaacagacaaaaaagaatt
caagaacaagaaaatcctaccttggaagctaatgctggtgcccaggttgcagacaatatg
gtcaggaggagttccctcagaaacaaaaggcagaaatgtgaatctggtaaagcagtgtac
atcgaatttggatctgattcttctgaagatcttctttttaaaaaagcaggtggtggtgga
atgggagacaaaggatttcagactccacctcaaaaaggagagtgtgaggaagaactaaag
tatgctgagaaggaaagtgaaagtccatacaacatgtggcctatcaagtcagatgcagga
gaaatactctcgtcagatatcttaggtgaatgtggtgtctcagaggaagacagcaaaggc
actgggaatggcatcggagacttagaggctgctcaagtgaatgtggctgacggtcattta
aaggagagccagggcatttctgcttcaaactcacaggcagagcagtgtgacagaacagcc
aactccagctctttactgaatgaggacacaagtttattccacagtgcagaagaaatggat
gttggggaaactcgattcagtagtaaaaacaaagagtctggcttagcacacagctcagaa
aaccaattagataaaagcaagaagaccggtaatggtgtccagcatacagaagctgtagaa
acatgtcaacctgagagtaactccctgcatgaaagggagcctgcttcggagagtctgttg
cagctcaagactcttcacggcaatcctttgagtcaagtttccgggaaaagactgaagaga
agcattcaaaaagtcaacgagtggttttctaaaagcaatgagatgctctcttctggttcc
tcccaggatgctcctgctggggcagctgacacagaagatgcagattcatatttatcagat
agagagtcctgtatttcagagaagactgacctgatggtaaaccgcacggaagttgtggtg
ggatgtgaaaatgacaggagtttgtcaaaatcaattgtgcataacattgaagataaaata
tttgggaaaacttataaaagagagaggaagtcaacccccctagtccacacgagagagatg
ccacggagtccaaaagtggaagatgttactactgaggtgaaaccctcaaataattctgga
acaagtaaattaaaacggaaaagaaagactgcctctgatctgcagcctgtggacttcatc
aagaagagagacgaaaaggatctaaagaagcactctgagggtgttaatcagtgccttgtt
agtagaaatactgaaaggaaaaaaggtggtgaaggttccactgttgttaatgggagtccc
atgggtgtgaaaaatggggacaatatatcagcagaacttcctctccgagaggggaaatcc
atattgaaaaatgatactgagaaagtagcttgcaacagcactgatagaaagccagcacag
aatacctgtgaccgaaagagtactaaaaaaatgagaagctcacagacaaaaagaagcaga
cattcaagtaggcccgtgtgtgctctgcagctggtagtggatagaaacgcaagttgccct
gatcagactgagctgcagattgatagctacccaagcagtgaagagccaagaaaagttgat
tcagaaaagaaacgagtcagacgcagcaggaggcttcagttactgactgaaaaaatgaca
aaagaaaccaggagaagaagtgagccaaatgagggagcgagaaagcatgccagtgaaagc
aaagattcctcctctggattacagaggaatgtattggtccatgtccctgaatgcaaaggc
cctgatgagcagcaggatgtaccgaaccataccatacctctgtcagacactgatctgagg
ggcaatgacttgcaagcagataaaacacgccctgatcctgaaaattgttctgacggtatg
caaactggaaagggcctcttgtatgtcgaaatgtcagtggaggatttaaatgcttgttct
gttgtgcctgatacagattctcaagttagcgaaaatcaaggcagccattcactcctgcag
cctcattccacaaatgtggatcaagctgcctgcccagtgcagaatttgtctgagaataat
cagtgtgctgccatcgagcctaaaaagaaagagttgtgtgcgtgttcacccaagaccaat
agacattgcacagaaaatgacttggaaaggttcagaaacccaaagtcgcatgaagctaaa
atcatttcagagttgaacacagaaactgaagacagtgagctagacacacagtacctccga
aatatgttcagacattcaaaaagactgtcatttacccttcatcctagtccagtgaaggaa
tcagtgacagaaagcactgcttctgaaacgctaaggaaatcaggtgctacctgtgtagaa
tataggcataaaaatagagacttaaaaaatgaacctccatatgttaaaaaaacagtgggc
ctggatgaggtttgcgagagagaagaacctaaaacgtgtgaatctgctaaaggtatttct
gggcatagtccaggaactcacttttccagggacaccgactatggacatgttagtgacgat
ggcaagactgtttcacaaattccagatcaagtgcagttattctccccaccaagagcagcc
acagccaagattaagagtaggggcagactgcaaaaacgaagacaaccaaaggaaaagaga
atttcatctgaaatggtgatagaaagtcaattaagtgagaacctaaacaaaagtaatgga
agcctaggtgaccggagtaatatagaagagcgaattttccaaataactgatttaagcaca
gttaatgaaacaggaagcaatcaaggagtaaaagctgaagaagctgaaaacaaagggcca
gtattaaatttacagcccaaaccagtgctggtatatcctgtagtttgtcaacaaagccct
gctgaatttagcagcaaagtaattgaaaagaatagttatgaaggggaatgcaaacaagta
aagagtgatgaagaacaagtatcccaaattgccagcgtaggtgtgcctgagtgcttaatt
tcagaggagactctggaacaatccactgaagatactagtggttttccattgctgtctgag
acccctgatggcttattatgctctgctggtgacgttaaagcgaacataagcatttgtgaa
attgataggaaagaaatttctgctgtatttgttaaaaatggtcagaatgcctcgttaaga
gaactggacagtggcagcagtagttctaagtctaggtctcaaaactttgttcgggaaccc
agaagaccggccgggaaattgcagtcctccgaggaggattctagtgaagatgaagaacta
ccatgctttcaggcattaatatttggcaaatcagcaagcacaccattgcagcctacagaa
cagatcatatctacggtagggtcttcatccccggcggagattctagcgttgctgaaccat
agcagtggcaatgataaagctgtacagaaaacgcctggagtcctctcgagagatacatgt
gtttctccaagccaagagtcagaatgctcagttaacttattttcttcccagtccaacatg
tcagaagattcaaccaatagaccacaagagttgaagaagcccgtaacatttgctccttgt
tccaaagaaatgagcagtttcaatggaagcagagaagctagtccaaatggtaatgaagag
ctgacaggaagaaaaactgatttggaagatggacaccaacgagaccagaatgtgcaacca
aatttaggtgaagcatccggatatgacagtgaagccagtcacccaggagattcttctggg
ctgtcctcccagggtgagatccttaccacacagcagaaggatgccatgcaaaacagctta
aaaaaactccaacaggaaatggctgtgcttgaggctgtgctggaagagcatggaagccag
ggctctgaattcccacccccgccctgtgacccgcctcattccagagtggaagggacactc
acagtgcgacagctgagaccagctagaggaacagcattaatttcagaagtaaatcttgaa
aatcacaaaatcagcagttcaaagggactttcatctgatgggttccatgtaatgccaagt
gatcattccaacataaacaataaagagctagaagaagaaggttcgaggtcgcctgcttta
cagctttcccatcctaaatcccatctattaaaaaaagaagctctggagcaaggccactgg
tgcccgaggctttggaaagccagaactcactcccaggagggaacacttcagcgggttggt
gtggcagaactgttggaagaagaggcaatgaaacaatgtaatcagtgtagaattgaacca
gaaaatgcagctgagcaggaatttggaacaaagataaacagtgcagctgttccgtgtgag
aatgtgaggaggactccaaacagctctcccttgaaattttctgaaagacttacccactgt
caaactgcagaatcaactaatagtgcagccgtatcgtggcatgttgctaatgggaagagt
actcagggatgtaagcaggagagaagggcattttcctctgcatctgctctgcacactgga
gttgtaaaagaaaatgccaaaagcccagttgtgacctgtggaagacaaatgtcaattgtg
gcatcaggtctgaaccagagtgagcttttactggtgcagaagtttgccaggaaaacccag
agcactttatctaatcaaattactgaaggaacaacccatgtcataatgaaaacagatatg
gagctagtgtgtgagcggacactgaagtactttctgggcattgcaggaagaaaatgggta
gttagctatgaatggattgttcagtcttttaaggaaggaaggatacttgatgagtacgac
tttgaagtgagaggagatgtgatcaatgggagaaaccaccaaggccctaaaagagctaga
cgatcccaggctggaaagctcttcaaagactttgagatctgttgctatggacctttcacc
gatatgcgcacaggtgatctagaacggatggtggagctttgtggcgcctcagtggtgaag
cagcctcatctgttcacacacaaagctaactctactgctgtaatagttgttcagcctgat
gcttggctcgaaaacgcagggtacagagcaatccaacagaagtgtactgccgtggtgacc
cgagagtgggttttagacagcgttgcatgctatgagtgccaggagtttgatacctacctt
gtctcccagtcatga
DBGET
integrated database retrieval system
