Trachemys scripta elegans (red-eared slider): 117869419
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Entry
117869419 CDS
T07347
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117869419 (SCN4A)
Ion channels [BR:
tst04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117869419 (SCN4A)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
117869419
NCBI-ProteinID:
XP_034612148
LinkDB
All DBs
Position
23:complement(2758042..2862108)
Genome browser
AA seq
1608 aa
AA seq
DB search
MFIMITILTNCVFMAMSDPPPWAKNVEYTFTGIYTFESMIKIVARGFCIDQFTFLRDPWN
WLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTITVIPAEALALFLESVPCPSLQHCQ
KCPEGYMCMKAGRNPNYGYTSYDTFSWAFLSLFRLMTQDFWENLFQLTLRAAGKTYMIFF
VVVIFLGSFYLINLILAVVAMAYAEQNDATMLEEQQREEEFQQLLEQLKKHQEEQEKLLR
DRKSSGSSQSSSAVEKKTGDSAPAAANNQGKSKDCNGRVIPRVMLERSATVEEPSPVDEQ
GKSDPDHVLAGSQDGPGLQQRAESAVSMISNTMEELEEAHQKCPPWWYKFAHTFLVWDCC
PLWLKLKAFVRLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFENVLTVGNLVFTGIF
TAEMVLKLIALDPYDYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAK
SWPTLSMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKISLDCTLPR
WHMHDFFHAFLIIFRILCGEWIETMWDCMQVAGQPMCLIVFLMVMVIGNLVVLNLFLALL
LSSFSADSLAASDDDGEMNNLQIAIGRITRAIDFVKRTVLMLLHLRWKEKREPAEEQEDN
KKDNYVLNHMDSGQDSKSEYMDGVAGKEQLFVDELDHMNFINNPNLTVQVPIASEESDLY
DEETSTQSDTEETKKPLSGGSTSSMCSTVDYKAPEVEAEEAADEAADGQGPEECFTEACV
RRFPFLYVDITTDKGKIWWNLRKTCFKIVEHNWFETFIIFMILLSSGALAFEDIYIEQRK
VIRTILEYADKVFSFVFVLEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLTANWLGY
SELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGV
NLFAGKYYRCINTTTDELFDISEVNNKSDCLALLHTNQARWVNVKVNFDNVGLGYLSLLQ
VATFKGWMDIMYAAVDSREIEEQPLYETNLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFN
QQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPHNKCQGLVFDFVTKQAFDIII
MVLICLNMVTMMVETDDQSPTKINVLYIINMIFIVIFTGECLLKMFALRYYYFTIGWNIF
DFVVVILSIGGIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSL
PALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSIICLFQITTSAGWD
GLLNPILNSGPPDCDPNLENPGSSVKGDCGNPSIGICFFCTYIIISFLIVVNMYIAIILE
NFNVATEESSEPLCEDDFEMFYETWEKFDPDATQFITYSVLSDFVDTLQEPLKIAKPNKI
KLITMDLPMVVGDKIHCLDILFALTKEVLGDSGEMDGLKATMEEKFMAANPSKVSYEPIT
TTLKRKHEEVCAIKIQRAFRRYLLKRSMKQASYLYRHSQEEGIFAEGAPEKEGLIVDKMN
KIYGNGDTHLEMASGLALAAPVASPETRAAPSEAKKRDGEREVKESLV
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atgtttatcatgatcaccattttgaccaactgtgtgttcatggcaatgagcgacccacca
ccatgggccaagaacgtggaatacaccttcactgggatatacaccttcgagtccatgata
aagatagtagccagaggattttgcattgaccaatttacattcctacgcgacccatggaac
tggctggatttcagtgttatcgttatggcttacaccacagagtttgtggatttgggaaat
gtctcagctctacgaacgttccgtgtcctccgcgcactgaaaacaatcaccgtgattcca
gctgaggctctggccctgttcctggaaagcgtcccatgtccatccctgcagcactgccag
aagtgccctgaaggatacatgtgtatgaaagcaggaaggaatccgaactatggctatacc
agctatgacacttttagctgggctttcctttccctcttccgcctcatgactcaggacttt
tgggagaatctcttccagctgaccctccgcgccgctgggaaaacgtacatgatcttcttt
gtggtggtcatattccttggttccttctacctcatcaacctgatcctggctgttgtagca
atggcctacgccgagcaaaacgatgctaccatgctggaggagcagcagagagaggaggag
tttcagcagctcctggagcagctgaagaaacatcaggaggaacaagagaaactgttacga
gaccgtaaatcaagcggcagctcccagagcagcagcgcagtggagaagaagacaggggac
tctgccccagctgcggctaacaaccaaggcaaatccaaagactgcaacgggcgagtcata
cccagggtcatgctggagcgctcggcgacggttgaggaaccaagtcctgtggatgagcaa
ggcaagtccgatcctgatcacgtgctagcaggcagccaagacgggcctggtctccagcag
agagcagagagcgcagtcagcatgatctctaacaccatggaagagctagaggaagctcac
cagaaatgtccgccctggtggtataaattcgcccatacattcctggtctgggactgctgc
cctctctggctgaagctgaaggcgttcgtacggctgatcgtgatggacccgtttgttgac
ctggggatcacaatctgcattgttctcaacacgctgttcatggccatggagcactacccg
atgaccgaagagtttgagaacgtgctaactgtggggaacctggtcttcactgggatcttc
accgcggagatggtgctaaagctcatagccctggatccctacgactacttccagcagggg
tggaacatatttgacagcatcattgtcaccctgagcttggtggagctgggcctggccaat
gtgcaggggctctctgtgctccgatccttccgcctgttgcgtgttttcaagcttgccaag
tcctggccaaccctcagcatgctcataaagatcatcggcaactccgtgggggctctagga
aacctcaccctggtactggccatcatcgtcttcatctttgccgtggtgggcatgcagctg
tttgggaagagctataaggagtgcgtgtgcaagatctctctggactgcacgctgccccgc
tggcacatgcacgacttcttccatgccttcctcatcatcttccgcatcctgtgcggggag
tggatcgagaccatgtgggactgcatgcaggtggctggccagcccatgtgcctcattgtc
ttcttgatggtcatggtcatcgggaacctcgtggtcctgaaccttttcttagctttgctg
ctgagctccttcagcgccgatagccttgcggcttctgatgatgatggcgagatgaacaat
ttgcagattgctattggcaggattaccagggcgattgactttgtaaagagaactgtcctc
atgctacttcacctgcggtggaaggagaagagagagccagccgaggaacaagaggataat
aagaaagacaactatgtgctaaaccacatggattcaggccaggattccaagtcggagtat
atggatggagtagctgggaaagaacagttgtttgtggatgagctggaccacatgaatttc
attaacaatcccaacctgactgtccaagtgcccattgcctctgaggagtccgacctctat
gatgaagaaacgagcactcagtcagacacagaagaaaccaagaagccgctgtctggcggc
agcacgtcatccatgtgcagcactgtggattacaaggcgccagaggtggaggcggaggag
gctgcagacgaggctgccgatggccaggggcctgaggagtgcttcaccgaggcctgcgtg
cggcgctttcctttcctctacgtcgacatcacaaccgacaaggggaagatctggtggaac
cttcggaaaacctgtttcaagatcgtcgagcacaactggttcgagacctttatcatcttc
atgatcctgctcagtagcggagcactggctttcgaagacatctacattgagcagcggaag
gtgatccgcacaatcctggagtacgctgacaaggtcttctccttcgtgtttgtcctcgag
atgctactcaagtgggtggcctatggtttcaaggtgtatttcaccaacgcctggtgctgg
ctcgattttctcatcgtggatgtttccattatcagcttgacagcaaactggctgggctat
tccgaactgggtgccatcaaatcactgaggactctgagggctttgcgaccactgcgggct
ctgtcaagattcgaaggcatgagggtggtggtgaacgccctgctgggtgccatcccctcc
attatgaacgtcctgctggtctgcttgatcttctggctgatattcagcatcatgggggtg
aacctgtttgcggggaagtactaccggtgcatcaacaccactacggacgagctctttgac
atcagcgaggtgaacaacaaaagcgactgcctggcgctactccacaccaaccaggcgcgc
tgggtcaacgtcaaggtcaacttcgacaacgtgggcttgggctacctgtccctgctgcag
gtggccaccttcaaaggctggatggacatcatgtatgcggccgtggactcccgcgagatc
gaagaacagccactgtatgagaccaacctctacatgtacatctacttcgtcatcttcatc
atcttcggcgccttcttcaccctcaacctcttcatcggcgtcattatcgacaacttcaac
cagcaaaagaaaaagtttggagggaaggacatcttcatgacggaggagcagaagaaatac
tacaacgccatgaaaaagcttggatcaaagaagccccagaagccaatccccaggccccac
aacaaatgtcaggggctggtttttgactttgtgacaaagcaagcttttgacatcatcatc
atggtcctgatttgtcttaacatggtgaccatgatggttgaaacagacgaccaaagccca
accaaaatcaacgtcctctacatcatcaacatgattttcatcgtcatcttcacgggcgag
tgcttgctcaaaatgttcgccttgcgctattactacttcaccattggctggaacatcttc
gactttgtggtggtcatcctctccatcggaggtatcgtcctttccgacatcatagagaag
tactttgtgtcccccaccctcttcagggtgatcaggctggcaagaattgggcgtgttctg
cggctgatccgaggagcaaaaggaatccggactctcttgtttgctttaatgatgtctctc
cctgctttgttcaatatcggcctcctgctgttcttggtgatgttcatctactccatcttc
gggatgtccaactttgcctatgtcaagaaggagtctgggatcgacgacatcttcaatttc
gagacgtttggaaacagcatcatctgtttgtttcagatcacgacgtctgccgggtgggat
ggtctcctcaaccctatcctgaacagtggcccaccggactgcgaccctaacttggagaat
cccggaagttcggtaaaaggagactgtggcaacccgtctattggcatctgctttttctgc
acctacatcatcatctcctttctgatcgttgtgaacatgtacatcgccatcatcctggag
aacttcaatgtggctacagaggagagcagcgaaccgctctgtgaagatgacttcgaaatg
ttctatgaaacgtgggagaagtttgatccagatgccacccagtttatcacgtacagcgtg
ttgtcggattttgtagacaccctgcaagagccactcaagattgccaaaccaaacaagatt
aaattaatcaccatggatttaccgatggttgtcggagataaaatccactgtctggatatt
ctctttgcgctgactaaagaagtgctgggtgactcaggggaaatggacggcttgaaagcc
acaatggaggagaaattcatggctgccaacccatccaaggtttcctatgaacccatcact
acgactttgaaaaggaagcacgaagaagtctgtgccataaaaatccaaagagccttccga
aggtatttactaaagcggtcgatgaaacaggcatcttatctgtacaggcatagtcaagag
gagggcatctttgcagagggagcaccagaaaaagaaggactaattgtagacaaaatgaac
aagatttatgggaacggtgatacacacctggaaatggcctcaggcctggctcttgcagcg
ccagttgcaagcccagagactcgagctgctcctagtgaggcgaaaaaacgggatggggag
cgagaggtgaaagagtcattagtataa
DBGET
integrated database retrieval system
