Trachemys scripta elegans (red-eared slider): 117875947
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Entry
117875947 CDS
T07347
Symbol
PKP1
Name
(RefSeq) plakophilin-1 isoform X1
KO
K10387
plakophilin 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04382
Cornified envelope formation
tst04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
117875947 (PKP1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117875947 (PKP1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tst04812
]
117875947 (PKP1)
Cytoskeleton proteins [BR:
tst04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
117875947 (PKP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT_EZ
HEAT
ZER1-like_2nd
HEAT_GCN1
HEAT_2
V-ATPase_H_C
SYS1_M
ARMC9_ARM
Atx10homo_assoc
Mo25
Motif
Other DBs
NCBI-GeneID:
117875947
NCBI-ProteinID:
XP_034623448
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All DBs
Position
4:130671663..130754867
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AA seq
727 aa
AA seq
DB search
MLHSPLKTALAYECFQDQASSTLALPSDHKLKTRGTGKQRVQEQVMMTVKRQKQKSSQSS
LGHSNRGSMYDGLADGVNYGTARGSYYAKAQTGNSNWGYPMYNGTLKRETDNRRFSSYSQ
MEGWGNRHHSKSVCSPTSPGGNYCLKSSRSEPDLCCEPPRGTLRRNQMGSQAVQKATLNR
QSMYSTCSTHHGTARKPLPDRNLSCSLGNKPDALYAQPVTSGRQDGVYGHSMSSSRICND
ELDSVAMTIQKAIQLLCSSDEKSQAMGAYYLQHTCFQDESAKQEVYRLGGIGKLIELLRS
PNQNVQQAAAGALRNLVFRNPANKLETRRQNGIRECVSLLRRTPNTEIQKQLTGLLWNLS
STDELKEDLIHEALPVLTDYVIIPFSGWSDGVSNRTREIVDPEVFFNATGCLRNLSSADA
GRHTMRNYPGLIDSVMTYTQNCVAASRPDDKSVENCICILHNLSYRLDAEVPNKYTQLNH
VARNAYVDKTLTGCFNSRSGKLENDEYVLPIPDEEYKPRGPSWLYHSDAIRTYLNLMDQS
KKDATLEACAGALQNLTASRGLMSNAMSQLIGLKEKGLPRIARLLQSSNSEVVRSGASLL
SNMSRHPILHKTMAPQVLPDVSRLLAFQSGNNSNFGDIMTSACYTMRNLIMSNPQMAKPY
LTSSMLNNVVNLCRNGSCPKAAEAARLLLGDLWSHRELQGILKQQGFDKNMLGSLTGSAF
RTLSSRF
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcttcactctccgctgaaaacagccctggcttatgagtgtttccaagaccaggccagt
tctacactggccttgccctcggatcacaagctgaaaactaggggcacgggaaaacagaga
gtccaggagcaggtgatgatgacggtgaaacggcagaagcaaaaatcctctcagtcgagc
cttgggcactccaaccgaggttccatgtatgatggtttggctgatggcgtcaactatggg
actgcccggggcagctattatgccaaagcccagacaggaaacagcaactgggggtatccg
atgtacaacgggacccttaaaagagagaccgacaaccgacgcttcagctcttacagtcag
atggagggctggggcaaccggcaccacagcaaatccgtctgcagccccaccagccccggc
ggcaactactgccttaagagcagccggagtgagcctgacctgtgctgcgagcctccccgg
ggcacgctcaggagaaaccagatgggaagccaggcagtgcaaaaggcaaccctgaaccgc
cagagcatgtacagcacctgcagcacccaccatgggactgctcggaaacccctcccggac
cgcaatctctcctgctctttgggcaacaagccggatgcgttgtacgcccagcctgtgacg
agcggcaggcaggatggggtgtatgggcattctatgtccagctccagaatatgcaatgat
gagctggacagcgtggcaatgaccatccagaaagccatacagctcctgtgctcctccgat
gagaaatctcaagccatgggtgcgtactacctccagcacacctgcttccaggatgaatct
gccaagcaagaggtctaccggctgggtggaattggcaagctaatagaactcctccgcagc
ccaaaccaaaatgtccagcaggctgcagctggggctcttagaaacctggtcttcagaaat
cctgccaacaagttagaaacccgacggcagaatgggataagggagtgcgtgagcctcctg
aggagaactccgaacactgaaatacagaaacagctgacagggctgctttggaacctgtcc
tccactgatgagcttaaagaagatttgatacacgaagccctccctgtcttgacagattat
gttatcatccctttctcggggtggtctgatggggtcagtaataggacaagagaaattgtt
gaccccgaggtgttcttcaatgctacaggctgtttgagaaacctgagttctgcagatgct
ggacgtcacaccatgagaaactaccctggcctgattgactcagtcatgacttatacccag
aattgtgtggctgccagccggcccgatgacaagtccgtggagaactgcatctgtatcctg
cacaatctgtcctaccgcctggatgccgaggtgcccaataaatacacccagctcaaccat
gtggccaggaatgcctatgtggacaagaccctcacaggctgcttcaacagcaggagtggg
aagttggagaacgatgagtatgttctacccattcccgatgaggagtacaaacccagaggg
cccagctggctctaccattctgatgccatccgcacatacctgaacctgatggaccagagc
aagaaagatgccaccctagaggcctgtgctggggccctgcagaacctcactgcaagcaga
ggactgatgtccaatgcaatgagccagctgattggcttaaaggagaagggtttgcctcgt
atagcacggctcctccaatccagtaacagtgaagttgtccgatctggggcttccttgctg
agcaacatgtcccggcatcctattctccacaaaaccatggctccccaggtgcttccagat
gtgtcccgtctcctggccttccagtctgggaacaacagcaactttggagatatcatgacc
tctgcttgctacaccatgcggaatctaatcatgtccaacccgcagatggccaagccttac
ttgacgagcagcatgctaaataatgtagtaaacctgtgccgaaatggctcctgtccaaaa
gcagctgaagccgctcgcctcctgctgggtgatctgtggtcacacagggagctccagggc
attctcaaacagcaaggattcgataagaacatgttgggatccttaaccgggagcgctttc
aggaccctgtcttccagattctaa
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