Trachemys scripta elegans (red-eared slider): 117875947
Help
Entry
117875947 CDS
T07347
Symbol
PKP1
Name
(RefSeq) plakophilin-1 isoform X1
KO
K10387
plakophilin 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tst04812
]
117875947 (PKP1)
Cytoskeleton proteins [BR:
tst04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
117875947 (PKP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT_EZ
HEAT
ZER1-like_2nd
HEAT_2
V-ATPase_H_C
ARMC9_ARM
UBQLN1
Atx10homo_assoc
Mo25
Motif
Other DBs
NCBI-GeneID:
117875947
NCBI-ProteinID:
XP_034623448
LinkDB
All DBs
Position
4:130671663..130754867
Genome browser
AA seq
727 aa
AA seq
DB search
MLHSPLKTALAYECFQDQASSTLALPSDHKLKTRGTGKQRVQEQVMMTVKRQKQKSSQSS
LGHSNRGSMYDGLADGVNYGTARGSYYAKAQTGNSNWGYPMYNGTLKRETDNRRFSSYSQ
MEGWGNRHHSKSVCSPTSPGGNYCLKSSRSEPDLCCEPPRGTLRRNQMGSQAVQKATLNR
QSMYSTCSTHHGTARKPLPDRNLSCSLGNKPDALYAQPVTSGRQDGVYGHSMSSSRICND
ELDSVAMTIQKAIQLLCSSDEKSQAMGAYYLQHTCFQDESAKQEVYRLGGIGKLIELLRS
PNQNVQQAAAGALRNLVFRNPANKLETRRQNGIRECVSLLRRTPNTEIQKQLTGLLWNLS
STDELKEDLIHEALPVLTDYVIIPFSGWSDGVSNRTREIVDPEVFFNATGCLRNLSSADA
GRHTMRNYPGLIDSVMTYTQNCVAASRPDDKSVENCICILHNLSYRLDAEVPNKYTQLNH
VARNAYVDKTLTGCFNSRSGKLENDEYVLPIPDEEYKPRGPSWLYHSDAIRTYLNLMDQS
KKDATLEACAGALQNLTASRGLMSNAMSQLIGLKEKGLPRIARLLQSSNSEVVRSGASLL
SNMSRHPILHKTMAPQVLPDVSRLLAFQSGNNSNFGDIMTSACYTMRNLIMSNPQMAKPY
LTSSMLNNVVNLCRNGSCPKAAEAARLLLGDLWSHRELQGILKQQGFDKNMLGSLTGSAF
RTLSSRF
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcttcactctccgctgaaaacagccctggcttatgagtgtttccaagaccaggccagt
tctacactggccttgccctcggatcacaagctgaaaactaggggcacgggaaaacagaga
gtccaggagcaggtgatgatgacggtgaaacggcagaagcaaaaatcctctcagtcgagc
cttgggcactccaaccgaggttccatgtatgatggtttggctgatggcgtcaactatggg
actgcccggggcagctattatgccaaagcccagacaggaaacagcaactgggggtatccg
atgtacaacgggacccttaaaagagagaccgacaaccgacgcttcagctcttacagtcag
atggagggctggggcaaccggcaccacagcaaatccgtctgcagccccaccagccccggc
ggcaactactgccttaagagcagccggagtgagcctgacctgtgctgcgagcctccccgg
ggcacgctcaggagaaaccagatgggaagccaggcagtgcaaaaggcaaccctgaaccgc
cagagcatgtacagcacctgcagcacccaccatgggactgctcggaaacccctcccggac
cgcaatctctcctgctctttgggcaacaagccggatgcgttgtacgcccagcctgtgacg
agcggcaggcaggatggggtgtatgggcattctatgtccagctccagaatatgcaatgat
gagctggacagcgtggcaatgaccatccagaaagccatacagctcctgtgctcctccgat
gagaaatctcaagccatgggtgcgtactacctccagcacacctgcttccaggatgaatct
gccaagcaagaggtctaccggctgggtggaattggcaagctaatagaactcctccgcagc
ccaaaccaaaatgtccagcaggctgcagctggggctcttagaaacctggtcttcagaaat
cctgccaacaagttagaaacccgacggcagaatgggataagggagtgcgtgagcctcctg
aggagaactccgaacactgaaatacagaaacagctgacagggctgctttggaacctgtcc
tccactgatgagcttaaagaagatttgatacacgaagccctccctgtcttgacagattat
gttatcatccctttctcggggtggtctgatggggtcagtaataggacaagagaaattgtt
gaccccgaggtgttcttcaatgctacaggctgtttgagaaacctgagttctgcagatgct
ggacgtcacaccatgagaaactaccctggcctgattgactcagtcatgacttatacccag
aattgtgtggctgccagccggcccgatgacaagtccgtggagaactgcatctgtatcctg
cacaatctgtcctaccgcctggatgccgaggtgcccaataaatacacccagctcaaccat
gtggccaggaatgcctatgtggacaagaccctcacaggctgcttcaacagcaggagtggg
aagttggagaacgatgagtatgttctacccattcccgatgaggagtacaaacccagaggg
cccagctggctctaccattctgatgccatccgcacatacctgaacctgatggaccagagc
aagaaagatgccaccctagaggcctgtgctggggccctgcagaacctcactgcaagcaga
ggactgatgtccaatgcaatgagccagctgattggcttaaaggagaagggtttgcctcgt
atagcacggctcctccaatccagtaacagtgaagttgtccgatctggggcttccttgctg
agcaacatgtcccggcatcctattctccacaaaaccatggctccccaggtgcttccagat
gtgtcccgtctcctggccttccagtctgggaacaacagcaactttggagatatcatgacc
tctgcttgctacaccatgcggaatctaatcatgtccaacccgcagatggccaagccttac
ttgacgagcagcatgctaaataatgtagtaaacctgtgccgaaatggctcctgtccaaaa
gcagctgaagccgctcgcctcctgctgggtgatctgtggtcacacagggagctccagggc
attctcaaacagcaaggattcgataagaacatgttgggatccttaaccgggagcgctttc
aggaccctgtcttccagattctaa
DBGET
integrated database retrieval system
