Trachemys scripta elegans (red-eared slider): 117876703
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Entry
117876703 CDS
T07347
Symbol
THBS1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04115
p53 signaling pathway
tst04145
Phagosome
tst04148
Efferocytosis
tst04350
TGF-beta signaling pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117876703 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117876703 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117876703 (THBS1)
04148 Efferocytosis
117876703 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
117876703 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117876703 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117876703 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117876703 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117876703 (THBS1)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Phagocytosis
Opsonins
117876703 (THBS1)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117876703 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
TSP1_CCN
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
117876703
NCBI-ProteinID:
XP_034624900
LinkDB
All DBs
Position
4:58243392..58263603
Genome browser
AA seq
1176 aa
AA seq
DB search
MELSGGLFLLLMLGVYGTNQIPESGGDDNSVFDIFELIGFTRKGAGRRATGVHLVKGPEP
SSPAYRIEDASRIPAVPDDKFQDLLDAIYAEKGFILLATLRQAKKSRGTLLAVERKDSSG
HIFNLVSNGKAGTLDLSLSGDGKQQVVSVEDALLATGHWKNITLFVQEDRAQLYVGCEKM
ENAELDIPIQNIFTRDLASSAKLRIAKGGVNDNFQGVLQNVRFVFGTTLEAILRNKGCSS
STSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVEMQGLRSMVTTLQ
DRVRKVTEENELIAKVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCP
LMPCSNATVPDGECCPRCWPSDYAEDGWSPWSEWTSCSVTCGNGVQQRGRSCDSLNNRCE
GSSVQTRTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGTGMITRIRLCNSPVPQMNGKPC
EGEARETKSCQKDPCPINGNWGPWSPWDVCTVTCGGGIQKRGRLCNDPEPQYGGKDCVGH
ATGTQVCNKQDCPIDGCLSNPCFAGTTCTSSPDGSWKCGACPTGYHGNGVQCKDIDECQE
VPDTCFILNGVHRCENTEPGYNCLPCPPRFTGTQPFGRGIEDATANKQVCKPRNPCTDGT
HDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNEDLVCVTNATYHCK
KDNCPNLPNSGQEDYDKDGIGDACDNDDDNDNIPDDRDNCAFIYNPQQYDYDRDDVGDRC
DNCPYNHNPDQTDTDNNGEGDACAVDIDGDGILNERDNCQYVYNVDQRDTDLDGVGDQCD
NCPMEHNPDQEDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDAC
DHDDDNDGIPDDKDNCRLVANPDQTDSDGDGRGDACKDDFDQDNVPDIDDICPENVDISE
TDFRRFQMVPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFI
NTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGE
HLRNALWHTGNTAGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMAD
SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggagctatcaggcggactttttctcctcctaatgcttggtgtctacgggacaaaccag
atcccagagtctgggggagatgataacagtgtgtttgacatctttgaactcatcggcttc
actcgcaagggggccggacgtcgggcaactggggtgcacttggtgaagggacctgagccc
tccagccctgcttaccgcattgaggatgccagccgcatcccagccgtgcctgatgacaag
ttccaagatttgctggatgccatctatgctgagaagggcttcatcttgctggctaccctc
cggcaggccaagaagagccggggcaccctgctggccgtggagcgcaaggacagctctggc
catatcttcaacctggtgtctaatggcaaggcaggcaccctagacctgagcctgtctggt
gatggcaagcagcaggtggtgtcagtggaagatgccctgctggccactgggcactggaag
aatatcaccctgttcgtgcaggaggaccgggcccagctttacgtagggtgtgagaaaatg
gagaatgctgaactggacatccccatccaaaacatcttcaccagggacctggccagcagt
gccaagctccgcatcgccaagggtggcgtcaatgacaatttccagggagtgctgcagaat
gtgcggtttgtctttggaacaaccctggaagccatcctaaggaacaaaggttgctccagc
tccactagtgcgatcattacattggacaatcccatcaatggctccagtccagctatccgt
actaattacattggccataaaacaaaggatatccaggcagtctgtggcttctcctgtgat
gaacttacaaatatgtttgtggaaatgcaaggattgcggtccatggttacaacacttcaa
gacagagtgcgcaaagtgactgaagaaaatgaattgattgccaaagtagtgcagattacg
cctggtgtgtgcattcataatggaattctgcacaaaaataaagaagagtggactattgat
agctgcactgaatgtacttgccagaattctgccactatatgcaggaaagtgtcttgccct
ctcatgccttgttctaatgccaccgttcctgacggggagtgctgcccacgatgctggccc
agtgactatgcagaggatggctggtccccttggtctgagtggacttcatgctctgtgacc
tgtgggaatggggttcagcagagaggccgttcttgtgatagtctcaataatcgctgtgaa
ggttcctctgtgcagactcgtacctgccacattcaggagtgcgataagaggttcaaacag
gatggtggttggagccattggtcgccatggtcatcatgttctgttacctgtggcactggc
atgatcactagaatccgtctttgcaactctccagtcccacagatgaatggcaaaccgtgt
gagggtgaggcaagagaaaccaaatcatgccagaaagacccttgcccaataaatggaaac
tggggaccctggtctccatgggatgtatgtacagtcacatgtggaggaggcattcaaaaa
cgtggacgtctttgcaatgatcctgagcctcagtatggtgggaaggactgcgtaggtcat
gccacagggacccaggtctgcaataagcaagactgtccaattgatggatgcctgtctaat
ccctgctttgcgggaacgacatgtaccagctcccctgatggttcctggaagtgtggtgcc
tgccctactggttaccatggcaatggtgttcaatgcaaagatattgatgagtgtcaagag
gttcctgatacctgctttatcctcaatggagtgcacaggtgtgagaacactgaacctgga
tacaactgcttgccttgcccaccacgtttcactggaacacagccttttggtcggggtatt
gaggatgccacagctaacaagcaggtctgcaaaccacgtaatccatgcacagatggaact
catgattgcaacaagaatgccaagtgcaattaccttggccacttcagtgaccccatgtac
cgctgtgagtgtaaaccaggctatgctggcaatggcataatctgtggtgaagatactgat
ttagatggatggccaaatgaggaccttgtctgtgttaccaatgctacttatcactgcaaa
aaagataactgtcccaatcttcccaactctgggcaggaagactatgataaggatggaatt
ggtgatgcctgtgataacgatgatgataatgataacattccagatgacagggacaactgt
gcattcatttacaacccacagcagtatgactatgatagggatgatgttggtgaccgctgt
gacaactgtccctacaatcacaaccctgatcaaactgacactgataacaatggagaagga
gatgcatgtgctgtggatattgatggagatggcattcttaatgaaagggataactgccaa
tacgtctacaacgtagaccagagggatacagatttggatggtgttggagatcagtgtgac
aactgccctatggaacacaatccagaccaggaggattctgactctgaccgcataggtgat
aaatgtgacaacaatcaggacatagatgaagatggccatcaaaataacctagataactgc
ccctatgtgcccaatgccaatcaagctgaccatgacaaggatggcaaaggtgatgcctgt
gaccatgatgatgacaatgatggtatccccgatgacaaagataactgcagactggttgcc
aacccagaccagactgactctgatggtgatggacgtggagatgcttgcaaagatgacttt
gaccaagacaatgtgccagacattgatgacatctgcccagagaatgttgacatcagtgag
acagacttccgtcgatttcagatggttcccctggatcccaagggaacatcgcaaaatgat
cctaattgggtggttcgtcaccagggtaaagagctggttcagactgtcaattgtgatcct
ggacttgcagtgggatttgatgaattcaatgctgtggacttcagtggcacattcttcatc
aatacagaaagggatgatgactatgctggctttgtatttggttatcagtctagcagccgt
ttctatgtagtcatgtggaagcagatcacccagtcctattgggactcaacaccaaccaaa
gctcaaggatactcagggctttctatcaaagtcgtgaactctaccacaggtcctggagag
caccttcgaaatgctctgtggcacacaggaaacactgctgggcaggtgcggaccttgtgg
catgaccctcgtcacataggctggaaagattttactgcctacagatggcgtcttagccac
agaccaaagactggctacattagagttgtaatgtacgaagggaagaaaatcatggctgat
tcaggaccaatctatgataaaacctatgctggtggtcggttaggattatttgtcttctct
caagaaatggtgttcttctcagatcttaaatatgaatgcagagatccataa
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integrated database retrieval system
