Trachemys scripta elegans (red-eared slider): 117876920
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Entry
117876920 CDS
T07347
Symbol
NR1H3
Name
(RefSeq) oxysterols receptor LXR-alpha
KO
K08536
liver X receptor alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03320
PPAR signaling pathway
tst04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117876920 (NR1H3)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
117876920 (NR1H3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117876920 (NR1H3)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tst03310
]
117876920 (NR1H3)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
117876920 (NR1H3)
Nuclear receptors [BR:
tst03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
117876920 (NR1H3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
117876920
NCBI-ProteinID:
XP_034625374
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Position
4:complement(71342199..71394972)
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AA seq
409 aa
AA seq
DB search
MGPTQLAAQDHGKRVASVFEMEEEGFSLFHGSEIPPEHAENPPLKRKKGPAPKMLGNEVC
SVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAQYVCKNGGKCEMDMYMRRKCQECRLRKC
QEAGMREQCVLSEEQIQLKKLKKQEDDQARTVVVRPTPPSPPNPPYKLTPEQLGMIEKLV
AAQQQCNQRSFTDRLKVTPWPQAPDPHNREARQQRFAHFTELAIISVQEIVDFAKQLPGF
LELTREDQIALLKTSTIEVMLLETSRRYNPETESITFLKDLSYNRDDFAKAGLQFEFINP
IFEFSKGMNDLQLNDAEYALLIAINIFSADRPNVQDQSLVEKLQHTYVEALHSYICIHRP
NDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgggtcccacacagcttgctgcacaggatcatgggaaaagggtggcaagtgtatttgaa
atggaggaggaagggttttcactcttccatggctcggagatcccccccgagcatgcagaa
aatccacccctgaagcggaagaagggtccagcccccaagatgctggggaatgaagtgtgc
agtgtatgtggggacaaggcctcaggcttccactacaacgtgctgagctgcgaaggctgt
aagggcttcttccgccgcagcgtcatcaagggtgcccagtatgtctgcaagaacggtggc
aagtgtgagatggacatgtacatgcgccgcaagtgccaggagtgccggctgcgcaagtgc
caggaggcaggcatgcgggagcagtgtgttctgtcagaagaacagatccagctgaagaag
ctcaagaaacaggaggatgatcaggctcggacagtggttgtgcgcccaacccccccatct
ccacccaaccccccctataaactgacacctgagcagttgggcatgatagaaaagcttgtg
gcagctcagcagcagtgtaaccagcgctcattcacagacaggctcaaagtgacgccatgg
cctcaggctccagaccctcataaccgtgaggcacggcagcagcgttttgctcatttcact
gagcttgcaatcatctctgtgcaagagattgtagactttgccaaacagctgcctggcttc
ctggagctcaccagggaagatcagattgctctgctgaagacatccaccatagaggtgatg
ctgttggagacatcccggcgctacaatccagagactgaaagcatcacctttctgaaggac
ctgagctataatcgggatgattttgccaaagcaggcctgcagttcgagttcattaaccct
atctttgagttttcaaagggaatgaatgacctacagctcaacgatgctgaatatgcactt
ttaatcgccatcaacattttctctgcagaccgaccaaatgtgcaggatcagtccctggtg
gagaaactgcagcacacctatgtagaggcccttcattcttatatttgcatccatagacca
aatgaccatctgatgttccctaggatgttaatgaaactggtcagtcttcggactctaagc
agtgtccactccgaacaagtttttgcccttcgactacaggacaagaaactccctcccctg
ctctcagaaatctgggatgtgcatgagtga
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