Trachemys scripta elegans (red-eared slider): 117877000
Help
Entry
117877000 CDS
T07347
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04010
MAPK signaling pathway
tst04120
Ubiquitin mediated proteolysis
tst04140
Autophagy - animal
tst04144
Endocytosis
tst04620
Toll-like receptor signaling pathway
tst04621
NOD-like receptor signaling pathway
tst04622
RIG-I-like receptor signaling pathway
tst05132
Salmonella infection
tst05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117877000 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117877000 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117877000 (TRAF6)
04140 Autophagy - animal
117877000 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117877000 (TRAF6)
04621 NOD-like receptor signaling pathway
117877000 (TRAF6)
04622 RIG-I-like receptor signaling pathway
117877000 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117877000 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
117877000 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117877000 (TRAF6)
04121 Ubiquitin system [BR:
tst04121
]
117877000 (TRAF6)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117877000 (TRAF6)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
117877000 (TRAF6)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117877000 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
TRAF6_Z2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
Med21
DUF4455
SlyX
RING_XB3-XBAT31
TRAF3_RING
PspA_IM30
DUF16
zf-RING_11
HMMR_N
CENP-F_leu_zip
ATG16
PUMA_CC
U-box
DUF7310
DUF1664
DUF7607
TMF_DNA_bd
Spc29
Sina_ZnF
DUF948
Motif
Other DBs
NCBI-GeneID:
117877000
NCBI-ProteinID:
XP_034625553
LinkDB
All DBs
Position
4:79201874..79235810
Genome browser
AA seq
547 aa
AA seq
DB search
MSLIQSDNSYRARDLETGCCAAMASACSAGAKEDSLGVSVSSGTGNLPNSFTEETQGYDV
EFDPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLF
PDNFAKREILSLKVRCPNKGCLLKMELRHLEEHQLNCDFCSVECLQCQSPFPKNQLQNHM
TLECPRRQVCCPNCATSMAYEDKELHDQNCPLANVFCEYCNTVLIREQMPNHYDNDCPTA
PVPCTYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQTLRSISVTTTTPMSYLSGLSFEP
SLFSHVPPATYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQSAHVGDLKRTIQ
NLEEKIAEMEAQQCNGIYIWKIENFSTHLRAQEEERPVVIHSPGFYTGKPGYKLCLRLHI
QLPNSQRCANFISLFVHTMQGDYDSHLPWPFQGTIRLSILDQSEGLARQNHEEVMEAKPE
LLAFQRPAIHRNPKGFGYVTFMHLQALKQRTYVKDDTLLVRCEVVTRLDLNIVRKEGFQP
RSTDGAV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgatacagagtgacaacagctatagagccagagatctggagactggctgctgt
gcagccatggccagtgcgtgcagtgctggagctaaagaagacagcctaggtgtctctgtc
agcagtgggactggaaaccttccaaactccttcacggaggagactcaaggatatgacgtg
gagtttgatccccccctggaaagtaaatatgaatgtccaatctgtttgatggctctacgg
gaagcagtgcagacgccatgcggacaccggttttgcaaaggctgcattgtcaaatcaata
agagatgcaggtcacaaatgtccagtagacaatgaaattctactcgaaaaccaactcttc
cctgacaactttgccaaacgggaaatcctctcactgaaggtgagatgtcccaacaagggc
tgtcttctgaagatggagctgagacatctagaggagcatcagttgaattgtgacttctgc
tctgtggaatgcctacaatgccagagccccttcccgaagaaccagctgcaaaaccacatg
acactggaatgcccacggcggcaggtctgctgtccaaactgtgctacatctatggcttat
gaagacaaagagcttcatgaccagaactgtccacttgcaaatgtgttttgtgaatattgc
aatacagtgctcatcagagaacagatgcctaatcattatgataatgactgccctaccgcc
ccagtaccatgtacatacagtgcctttggatgtcctgaaaagatgcagaggaatgagttg
gcacgtcatatgcaagagttcactcaggttcacatgagaatgatggctcagactctccgg
agtattagtgttactaccacaactcccatgtcctacctcagtggcctatcttttgagcca
tctctcttctcacatgtcccacctgccacatatgactgcaacccagaagttgagaacttc
aaggaaaccattcagcagttggaaggtcgcctggtaagacaagatcaccagatcagagag
cttattgctaaaatggagactcagagcgctcacgtgggagacctcaaacgcactatccaa
aatctagaggaaaaaattgccgaaatggaggcacaacaatgtaacggcatttacatctgg
aagattgagaacttcagcacacatctgagagcccaagaagaagagagacctgttgtgatc
cacagccctggcttctacactgggaaaccaggctacaaactgtgtttgcgcctgcatatc
cagttaccaaattctcagcgctgtgctaactttatatccctctttgtccatactatgcaa
ggagactatgacagtcatctgccttggccatttcagggcaccatacgactttctattttg
gatcaatcagagggacttgcaaggcagaatcacgaagaagtaatggaagccaaacctgag
cttctagccttccagagaccagcaatccaccgcaacccaaaaggttttggttatgtgaca
ttcatgcacctgcaagctttgaagcaaagaacctatgtaaaagatgatactcttctggtg
cgctgtgaggttgtaacacgtttagacttgaacattgtacggaaagagggctttcaacct
cgcagtactgatggggctgtatag
DBGET
integrated database retrieval system
