Trachemys scripta elegans (red-eared slider): 117878990
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Entry
117878990 CDS
T07347
Symbol
C9orf72
Name
(RefSeq) guanine nucleotide exchange C9orf72 homolog isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117878990 (C9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117878990 (C9orf72)
Membrane trafficking [BR:
tst04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
117878990 (C9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
PH_PLEKHM2
Motif
Other DBs
NCBI-GeneID:
117878990
NCBI-ProteinID:
XP_034629686
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All DBs
Position
6:complement(110781347..110806420)
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AA seq
481 aa
AA seq
DB search
MSALCPPPSPAVAKTEISLNGDSPLLAATFAYWDNILGPRVRHIWAPKTEQMLLSDGEIT
FLANHTLNGEILRNAESGAIDVKFFVLAEKGVIIVSLIFDGNWNGDRSTYGLSIILPQSE
LGFYLPLHRVCVDRLTHIIRKGRIWMHKERQEHFQKIVLESTERMEDQGQSIIPMLTGEV
IPVMELLSSMKSHSVPEEINISDTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVIGSS
AEKVNKIVRTLCLFLTPSERKCSRLCRNESSFKYESGLFVQGLLKDATGSFVLPFRQVMY
APYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELAAFWRANSDEEMAQDITIHTDESF
TPDLNVFQDVLHRDTLVKAFLEQVFHLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDT
QKGKKPFKSLRSLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMT
F
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctctctgtccacctccttctcctgcagttgccaagacagagatctccttgaat
ggggactcaccattactagcagctacttttgcctactgggacaatattcttggacctaga
gtcagacacatctgggcccccaagacggaacagatgcttctcagtgatggagaaataact
tttcttgcaaatcacacattgaatggggaaatacttaggaatgcagagagtggagcaata
gatgtgaagttttttgtcttggcagaaaaaggagtaattattgtgtcattaatctttgat
ggaaactggaatggggacagaagtacatatggactatcaattatacttccacaaagtgaa
cttggcttctatcttcctcttcacagagtgtgtgttgataggttaacgcatattataagg
aaaggaaggatatggatgcataaggagaggcaagaacatttccagaagattgtcttggaa
agcacggagagaatggaggatcagggccaaagcatcattccaatgctgacgggagaagtt
attcctgtaatggaacttctttcatctatgaaatcacacagtgttccagaagaaataaat
ataagtgacacagtgttaaatgatgatgacattggggacagttgccatgaaggttttctc
ctcaatgccataagttcacacctgcagacttgtggttgctctgtggttataggtagcagt
gcagagaaagtaaataagatagtgaggacactgtgtctgtttcttactccatcagaacgg
aagtgttccagactctgtagaaatgaatcttccttcaaatatgaatcaggactctttgtt
caaggattgcttaaggatgcaactggaagctttgtgttgcccttccgtcaagtaatgtat
gctccatatcctactacgcatatagatgtggatgtcaacacagtgaagcagatgccccct
tgccatgaacatatctataaccaacggcgatacatgaggtccgagctggcagcattttgg
agagccaattcagatgaagagatggctcaagatatcactatccatacagatgaaagcttc
actcctgatttgaatgtttttcaagatgtcctgcatcgtgatacattagtaaaagccttc
ctggagcaggtctttcatttgaaacctggcttgtctctgaggagtactttccttgcccag
tttctgctagtccttcatagaaaagccttaactcttataaagtacatagaggatgatacg
cagaaaggaaaaaagccttttaagtctctccgtagcttaaaaatagaccttgacttaaca
gcagagggcgatcttaacataataatggctttagctgagaagatcaaacctggtctacat
tcctttatctttgggagacccttctacactagtgtacaagaacgtgatgtactaatgaca
ttttaa
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integrated database retrieval system
