Trachemys scripta elegans (red-eared slider): 117880105
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Entry
117880105 CDS
T07347
Symbol
CXCL12
Name
(RefSeq) stromal cell-derived factor 1
KO
K10031
C-X-C motif chemokine 12
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04060
Cytokine-cytokine receptor interaction
tst04672
Intestinal immune network for IgA production
tst04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
117880105 (CXCL12)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
117880105 (CXCL12)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
117880105 (CXCL12)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
tst04052
]
117880105 (CXCL12)
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117880105 (CXCL12)
Cytokines and neuropeptides [BR:
tst04052
]
Cytokines
Chemokines
117880105 (CXCL12)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Chemokines
117880105 (CXCL12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IL8
Motif
Other DBs
NCBI-GeneID:
117880105
NCBI-ProteinID:
XP_034631731
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All DBs
Position
7:complement(60563660..60581021)
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AA seq
93 aa
AA seq
DB search
MNGKALALLTCLLLSLSPSEEKPVSLTYRCPCRFYESNVAKANIKHLKILTTPNCSLQIV
ARLKNNSKQVCIDPKLKWIQEYLEKALNKRFKM
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggaaagccctagcactgctcacttgtctgctgctctctctctccccctcggag
gagaaacccgtcagcctgacctaccgatgcccctgcaggttctacgagagcaacgtggct
aaagccaacatcaagcacctcaaaatcctgaccaccccgaattgctcgctgcagattgtc
gcaaggctgaagaacaacagtaagcaagtatgcattgatcccaagttaaagtggattcag
gaatatctggagaaagctttaaacaagaggttcaagatgtaa
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