KEGG   Trachemys scripta elegans (red-eared slider): 117880141
Entry
117880141         CDS       T07347                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
tst  Trachemys scripta elegans (red-eared slider)
Pathway
tst03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tst00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117880141 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tst03041]
    117880141 (SMNDC1)
Spliceosome [BR:tst03041]
 Complex A
  U2 snRNP components
   U2 related factors
    117880141 (SMNDC1)
 Complex B
    117880141 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    117880141 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR
Other DBs
NCBI-GeneID: 117880141
NCBI-ProteinID: XP_034631825
LinkDB
Position
7:118220322..118237578
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSEALAS
SDSSASALPSHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaagatcttgcaaaacagctagctagctataaagctcagctccagcaagttgag
gctgctctttctgggaatggagaaaatgaagacttactaaaattaaaaaaagatttacag
gaagttatagaattaaccaaagatctcctttcaacacaaccttcggaagcccttgcaagt
tctgatagttctgcttctgccctacccagtcactcctggaaggttggggataaatgtatg
gcaatatggagtgaagatggacagtgttacgaagctgagattgaagagatagatgaggag
aatggtactgctgcaatcacgtttgctggatatggcaatgctgaagtcacgcctctgctc
aacctcaaacctgtagaagagggaagaaaggcaaaagaggacagtggcaacaaacccatg
tccaaaaaagagatgattgcacagcaacgagaatataaaaagaagaaagctttgaaaaaa
gcccagagaatcaaagaacttgaacaggagcgagaggaccagaaagtcaagtggcaacag
ttcaacaacagagcctattcgaaaaacaaaaaaggccaggtaaagaggagtatttttgct
tcccctgagagcgtgactggcaaagtcggagttggaacatgtggaattgcagacaaaccc
atgacacaatatcaagatacctctaaatataatgtcaggcatttgatgcctcagtaa

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