Trachemys scripta elegans (red-eared slider): 117880805
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Entry
117880805 CDS
T07347
Symbol
SLIT1
Name
(RefSeq) slit homolog 1 protein
KO
K06838
slit 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117880805 (SLIT1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117880805 (SLIT1)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Axon guidance molecules
117880805 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
Laminin_G_2
Laminin_G_1
LRR_5
hEGF
EGF_TEN
LRR_1
LRRNT
LRR_9
LRRCT
LRR_14
EGF_Teneurin
LRR_NXF1-5
LRR_EndoS
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
117880805
NCBI-ProteinID:
XP_034633175
LinkDB
All DBs
Position
7:complement(125244545..125291698)
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AA seq
1247 aa
AA seq
DB search
MCTCSNSVVDCRGKGLTAIPANLPEGMTEIRLELNGIRSVPPGAFSPYKKLRRIDLSNNQ
ISEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLHALQLLLINANKINCIRADTFGDL
QSLSLLSLYDNKLQGLAKGTFAPLRAIQTLHLAQNPFICDCNLRWLADFLRANPIETSGA
RCASPRRLANKRIGQIKSKKFRCSAKEQYFIPGAEDHQLNSECSSDVSCPPKCRCEANVV
ECSNLKLTKLPERIPQTTAELRLNNNEISVLEATGLFKKLPHLKKINLSNNKVTEIEDGA
FEGAASVSELHLTANQLESVRSGMFRGLAGLRTLMLRNNRISCIHNDSFTGLRSVRLLSL
YDNQISTIAPGAFDTLQSLSTLNLLANPFDCNCRLAWLGDWLRRRKIVTGNPRCQNPDFL
RQIPLQDVAFPDFRCEEGQEETGCVPRPQCPQECTCLDTVVRCSNKHLKSLPKGIPKNVT
ELYLDGNQFTLVPGELSSFRSLQLVDLSNNKISSLSNSSFTNTSQLTTLILSYNALQCIP
PLAFEGLQALRLLSLHGNDISSLPEGIFADVTSLSHLAIGANPLYCDCHLRWLSGWVKTG
YKEPGIARCAGPPDMEGKLLLTTPAKKFECQGPPALSIQAKCDPCLSSPCQNQGTCHSDP
LAAYRCTCPSGYKGKDCEEPVDSCSSSPCANGGTCQPPEREGTGFTCLCAAGFEGPTCSA
ITDVCQDQACANGGTCMPGLGNGTCLCQPHYTGRACEELLDLCSVELSPCPHGAQCVVTA
AGPRCECAPGYGGDNCSLDPGCRDHRCQHGAQCQAEGSGYSCLCTQGYSGQLCEMPPRAQ
PSLCARAECQNGADCVELGTRAVCRCPPGFGGPKCEKLLSVNFVDRDTYLQFTDLHNWPR
ANITLQVSTAEDNGILLYNGDRDHMAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFH
TVELVTFEQMVNLSIDGGSPMTMDSFGKPHTLTSEAPLYVGGMPVDVNSAAFRLWQILNG
TGFHGCIRNLYINHELQDFTKTQMKPGVVPGCEPCRKLYCLHGLCQPDAAHGPVCHCEPG
WAGPHCDQQGHSPCQGHKCVHGDCVPLDALSYSCQCRDGYHGALCSQPGELDNPCKSLPC
VHGHCQISARGEASCECQSGYAGQLCDQESECRGEPVREHPQVQRGYAICQTTRPVSWVE
CRGSCQGQGCCTGLRLKRRKFTFECSDGSSFVEEVEKASKCGCARCM
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgtgcacctgcagcaacagtgtggtggactgccgcggcaaggggctgacggccatcccc
gccaacctgcccgagggcatgacggagatacgcctggagctgaacgggatcagatccgtc
ccccctggggccttctcaccctacaagaagctgcggcggatagacctgagcaacaaccag
atctcggagatcgcgcccgacgccttccaggggctgcgctcactaaactcactcgtgctg
tatgggaacaagatcacagacctgccccggggcgtcttcgggggactccacgcgctgcag
cttctgctcatcaacgccaacaagatcaactgcatccgcgccgacaccttcggggacctg
cagagcctctctctgctctcgctgtacgacaacaagctacagggcctggccaagggcacc
ttcgcccccctgcgggccatccagacgctgcacctggctcagaaccccttcatctgcgac
tgcaacctgcggtggctggcggatttcctgcgcgccaaccccattgagaccagcggtgcc
cgctgcgccagcccgcgccgcctggccaacaagcgcatcggccagatcaagagcaagaag
ttccgctgctcagccaaagagcagtactttatcccaggcgcggaggatcaccagctgaac
agcgagtgcagcagtgacgtgagctgccccccgaagtgccgctgcgaggccaacgtggtg
gaatgctccaacctgaaactcaccaaactcccggagcgcatcccgcagaccacggcagag
ctacgcctgaacaacaatgaaatctccgtcctggaggccacggggctcttcaaaaaactc
ccacacctgaaaaaaatcaacctgagcaacaacaaggtgacggagatcgaggacggggcc
ttcgagggggcagcgtccgtcagcgagctgcacctgacggccaaccagctggagtcggtg
cgcagcggcatgttccggggcctggcggggctgcggaccctcatgctgcgaaacaaccgc
atcagctgcatccacaacgacagcttcacggggctgcgcagtgtgcgcctgctctcgctc
tacgacaaccagatcagcaccatcgcgcctggcgccttcgacacgctgcagtcgctctcc
acgctgaacctgctggccaaccccttcgactgtaactgccggctggcctggctgggcgac
tggctgcggaggaggaagatcgtcacggggaacccgcgctgccagaaccccgacttcctg
cggcagatcccgctccaggacgtggccttccccgacttcaggtgtgaggaaggccaggaa
gagacagggtgcgtcccacggccacagtgccctcaggagtgcacctgcctggacacggtc
gttcgctgcagcaacaaacacctcaagtcgctgcccaaggggatcccaaagaacgtcact
gagctttacctggacggcaatcagttcacactggtccccggagagctctcctccttccga
tccctgcagctggttgacctgagcaacaacaagatcagctccttgagcaactcctccttc
accaacacgagccagctcaccaccctgatcctcagttacaacgccctgcagtgcatcccc
ccgctggccttcgaagggctccaggcgctccggctgctgtctctgcatggcaacgacatc
tccagcctgccagagggcatcttcgccgacgtcacctccttgtcccacctcgccatcggg
gccaaccccctgtactgtgactgccacctgcgctggctctcgggctgggtcaaaacaggc
tacaaggagcccggcatcgcccgctgcgccggcccgcccgacatggaaggcaagctgctg
ctcaccaccccggccaagaagtttgagtgccaaggtccgccggccctgagcatccaggcc
aagtgtgatccctgcctctccagcccgtgccagaaccaaggcacctgccacagtgacccg
ctggccgcctaccgctgcacctgccccagcgggtacaagggcaaagactgcgaggagccc
gtggacagctgctccagtagcccctgcgccaacggcgggacctgccagcccccggagcgg
gaggggaccgggttcacgtgcctttgtgcagcaggattcgaggggccgacctgcagcgcc
atcaccgacgtctgccaggaccaggcctgtgccaacgggggcacctgcatgcctgggctc
ggaaacggcacctgtctgtgccagccccactacacaggacgggcctgcgaggagctgctg
gatctctgctccgtggagctcagcccctgcccgcacggtgcccagtgcgtcgtcactgcc
gcggggccccggtgtgagtgtgcccccggctacgggggggacaactgcagcctggaccct
ggctgccgggaccaccgctgccagcacggcgcccagtgccaggccgaggggagcggctac
tcctgcctctgcacacagggctacagcgggcagctgtgtgagatgccgcctcgcgcccag
cccagtctctgcgcgcgggccgagtgccagaacggggccgactgcgtggagctgggcacc
cgggccgtgtgccgctgcccccccggcttcgggggccccaagtgcgagaagctgctgagc
gtcaactttgtggaccgggacacgtacctgcaattcaccgacctgcacaactggccgcgg
gccaacatcacgctgcaggtctccacggccgaggacaacgggatcctgctgtacaacggg
gatcgggaccacatggccgtggagctgtaccagggccacgtgcgggtcagctacgacccc
ggcagctaccccagctcggccatctacagcgccgagaccatcaacgacgggcagttccac
acggtggagctggtgaccttcgagcagatggtgaatctctccatcgacggcggcagcccc
atgaccatggacagcttcggcaagccccacacgctgaccagcgaggcgccgctctacgtg
ggaggcatgccggtggacgtgaactcggccgccttccgcctctggcagatcctcaacggc
accggcttccatggctgcatccgcaacctctacatcaaccacgagctgcaggacttcacc
aagacccagatgaagccgggggtggtgccgggctgcgagccatgccgcaaactgtactgc
ctgcatggcctatgccagcccgacgccgcccacggccccgtctgccactgcgagccgggc
tgggcagggccccactgcgaccagcagggccacagcccctgccagggccacaagtgtgtc
catggggactgcgtgcccctcgacgccctctcctacagctgccagtgccgtgacgggtac
cacggcgccctgtgcagccagccgggcgagctcgacaacccctgcaagagcctgccttgc
gtgcacgggcactgccagatctcggcccggggggaggcgtcctgcgaatgccagagcggc
tacgccggccagctgtgcgaccaagagtcggagtgccggggcgagccggtgcgggagcac
ccccaggtgcagcggggctatgccatctgccagaccacgcgccccgtctcctgggtggag
tgccggggctcctgccagggccagggctgctgcacggggctgcgcctcaagcggaggaag
ttcaccttcgagtgcagcgacggctcctccttcgtggaggaggtggagaaggccagcaag
tgcggctgcgcccggtgcatgtag
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integrated database retrieval system
