Trachemys scripta elegans (red-eared slider): 117887903
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Entry
117887903 CDS
T07347
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117887903 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117887903 (KDM2B)
04121 Ubiquitin system [BR:
tst04121
]
117887903 (KDM2B)
03036 Chromosome and associated proteins [BR:
tst03036
]
117887903 (KDM2B)
Enzymes [BR:
tst01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117887903 (KDM2B)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117887903 (KDM2B)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117887903 (KDM2B)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117887903 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117887903 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
117887903
NCBI-ProteinID:
XP_034646535
LinkDB
All DBs
Position
15:6985758..7155815
Genome browser
AA seq
1268 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVCIRSFNLEEKLKSQKYHGNFVR
DMEGKDLTFEYVQREALRVPLLFRSKDGLGIKMPDRDFTVRDVKLLVGSRRIVDVMDVNT
QKGIEMSMSQFVRYYETPEAEREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVELCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRVYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDATRKPSVDSFSSDSWLDMDEESCDAHTREEKEDNLDKNTKSLADGSSSPNSTH
SEGKDVAGKKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVA
WPKKTTKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDVAKRKGECEETPRRKSDEHSKKTPVDSILRRKSDDAHMRRKRKFEK
PQEPAMRKRLKLGKEEKLFRKKRRSWKATDDRPAMAKPLRRFKQEPEEDLPEAPPKSKES
DQSRSSSPTAGPSTESAEPRDKKKIKMRRKRRLPNKELSKELSKELNQEIQKTENSLANE
NHQPIKSEPESENEEPKRALSNSERLHRFSKGLNGTPRELRHQLVPSLRSTPRVITRPPP
SLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHSDLCICMRV
CKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRL
PGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQIDN
RSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVSDQSINLLTAVGTTTRD
SLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQME
EKLLQKLS
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgatctatt
ggtagaaggagatacgatgagaatgaggacctctcggatgtggaggaaattgtctgcatc
aggagttttaatttggaggagaaattaaagagtcaaaagtatcatgggaatttcgtgcgt
gacatggaagggaaagatcttacttttgagtatgtgcaaagagaagctctcagggttccc
cttctcttcagaagtaaagatggactgggaattaaaatgccagaccgggatttcactgtc
agagatgtgaagctattagtgggaagccgtcgaattgtggatgtgatggatgtgaacacg
caaaagggcattgagatgagcatgtctcagtttgtgagatactatgaaacaccagaggct
gaacgtgagaagctctacaatgtcatcagcctggagttcagtcatacaaagctggagaac
attgtcaagcgccccaatgtggtggacttagtcgattgggtggataatatgtggccgcag
catttgaaggagaggcagacagatgccacgaatgctatttcggagatgaagtacccaaaa
gtgaaaaagtactgtttgatgagcgtgaaaggatgcttcactgattttcacattgatttt
ggtggcacttcagtgtggtatcacgttttccgaggagggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctgtcaggaaagcaaagtgat
atctttctgggagacagggtggaactatgccaaagaattgagttgaaacaaggctatacg
ttttttattccttcaggatggatacatgcagtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcgtctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagaataccag
aaagaatcaatgttaattgatgccacaagaaaacccagcgtagacagcttctcatcagat
tcctggttagacatggatgaagaatcttgtgatgctcatacccgggaggagaaggaagac
aatttggataagaacacaaagtccttggctgatggttcctcctctcccaacagcacacac
tctgaagggaaggatgttgcagggaaaaaacagaaagccacagtgatgagatacctcaaa
agaactttgtccaatgagtcagatgacagtgtaaagtcaacaacccccacggactatccc
aaaacaccaacagggtcgccagctaccgaagtctcaaccaaatggactcatctcacagag
tttgaactgaaaggtttgaaagccctagtagaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaggatcctcaggcacttctggaggatatgaagaacatt
ctgaaggaacatgctgatgacgaccagaatcttgccatttcgggggtccctgtggtagcc
tggcctaagaagaccacaaagaacagggcagttggacgacccaaagggaaactgggcact
gcctctgcagtgaagctagctgctaatcggacgactgcaggagcacgccggagaaggacg
cgatgccgcaagtgcgaggcttgtctacgtacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaagtttggtgggcctggaaggatgaagcagtcctgcattatgaggcagtgc
atcgcaccagtgctgcctcacactgctgtgtgtctcgtgtgcggagaagctgggaaggag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgttccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gaactgccgaattgctgggaatgtccaaagtgcaaccatgcagggaaaactgggaaagcg
tacaagcaaaagcgtggaccaggattcaaatatgcgtcgaatctcccaggctcactgctt
aaggaacagaagatgaacagagataataaggaagtaacagatgtagcaaaacggaaaggg
gaatgtgaagaaacccccaggcggaaatctgatgaacattccaaaaaaacccctgttgat
tctattttgaggagaaagtcagatgatgcgcatatgcgaaggaaaagaaaatttgagaaa
ccccaagaacctgctatgagaaaacggctaaaacttggtaaagaagagaaactcttcagg
aaaaagaggcgatcatggaaagctacagatgaccgacctgccatggccaaacccctgcgg
cgttttaaacaggaacccgaggaggatctgccagaagcacctccaaagtccaaggagagt
gaccagtcacggtcgagctctcccactgcgggccccagcaccgaaagtgctgagcccagg
gacaagaagaagataaagatgaggcggaaaaggcggcttccaaataaggaactgagcaaa
gagctcagcaaggagctcaatcaggagatccaaaaaaccgagaacagccttgccaatgag
aaccaccagcccatcaaatctgagccagagagcgagaatgaggagcccaagcgtgctctg
agcaatagcgagagactccacaggttcagcaaagggttaaatgggactcctcgggagctg
aggcaccaacttgtgccaagcctgcgaagcacacctagggtgattacccggccaccacct
tcgctctctcctcccaaatgcattcagatggaacgccatgtaatcaggccaccccccatc
agccctcctccggactcactccccctagatgacggggcagcccatgtgatgcaaagggaa
gtctggatggctgtctttagctacctcagtcatagcgacttgtgcatctgtatgagagtt
tgtaagacctggaacagatggtgctgtgataaaagattgtggaccaaaatagatctaaac
cattgtaaatccatcactccacttatgctcagtggcattatcaggagacaacctgtaacc
cttgatcttagctggacaaacatatctaaaaaacagctgagctggctcatcaacagactc
ccaggtctacgagacctgctgttatcaggatgttcatggatagccgtctcagcactttgt
agttccagttgtcctttactccgaaccctggatgttcagtgggtggaaggattaaaagat
gcacaaatgagagacctcttatcaccaccaacagataacaggccaggtcaaattgacaac
cgaagtaaactacggaacatagttgagctgcgtttggctggtctggatattacagatgct
tctttacgattgatcattaggcacatgcctctgctttccaaactcaatcttagttactgt
aaccatgtgtcagatcagtctattaacctgctgactgcagtaggaaccaccacgcgtgat
tccttaactgaaattaatttatcagattgcaataaggttactgaccagtgcctgtcctac
tttaaacgttgtggaaacatctgtcagattgacttgaggtactgcaagcaagtgacaaag
gaaggctgtgagcagttcatagcagagatgtccgtgagtgttcagtttggtcagatggaa
gagaaacttcttcaaaaactgagttag
DBGET
integrated database retrieval system
