Trachemys scripta elegans (red-eared slider): 117888675
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Entry
117888675 CDS
T07347
Symbol
LDLR
Name
(RefSeq) low-density lipoprotein receptor isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03272
Virion - Hepatitis viruses
tst04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
117888675 (LDLR)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117888675 (LDLR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117888675 (LDLR)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
117888675 (LDLR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
SGL
EGF_CA
EGF
Vgb_lyase
EGF_3
hEGF
Psg1
Motif
Other DBs
NCBI-GeneID:
117888675
NCBI-ProteinID:
XP_034648184
LinkDB
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Position
16:15648550..15676979
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AA seq
864 aa
AA seq
DB search
MARARAGVAASLLALGLLVLRGTAASSAEEQCGQTEFRCQDGECIPSKWVCDGSPECKDE
SDEWLETCKSVTCKSEEFGCGGRVNRCIPASWRCDAKADCENGADEQDCAPKRCMDDQFQ
CHNGQCLSLAFVCDEDHDCEDGSDEADCPAPTCNPDMFQCNSSLCIPKLWACDDDPDCPD
GSDEWPQNCGGRVAPTPGPCSPLEFHCGSGECIHAQWRCDGGLDCRDRSDEENCAKPTCR
PDEFQCSDGACVHGSRQCDQEYDCKDLSDEVGCENVTACEGPDKFKCRSGECIALDKVCN
RQRDCRDWSDEPIKECDTNECLANKGGCSHICKDLKLGYECLCPEGYQLVGQKKCEDIDE
CLNPDTCSQICVNLEGSYKCECNEGYQLDLTTKTCKAIGTIAYLFFTNRNEVRRMTLDRS
DYGSLISHLKHVVALDLEIAERKIYWSDLSQKKIYSTQLDQADNSTHHTTVISTGLRAPD
GIAVDWVHGNIYWTDSALGTVSVADREGAKRKTLIEEPGSKPRAIVVDPSHGFMYWTDWG
TSAKIAKSGLNGVDSFPLVKDGIEWPNGITLDLVNQRLYWVDSKLHSISSVGVNGGSRKT
ILEDQERLAHPFAVTVFEDKVFWTDILNEAIFSANRLTGANVTLVAEDLFSPEDIVLYHN
LRQPAGVNWCENHPLPNGGCEYLCLPAPQITSHSPKYTCACPDALHLAADMRSCAKDPAV
PTAPSTTPLARLLTTTSTLKQTARPPAATAGVPNTHARDGPDLTTSEMVTLSQQARNDVA
AETNQDKHSGPTALSVVLPLVLISLIAFGAFLVWKNWRLKNINSINFDNPVYQKTTEDEV
HICRSQDGYTYPSRQIVSLEDDVA
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggcacgggcacgggcaggggtcgccgcctcgctgctggctctggggctactcgtcctg
cgtggaaccgctgcgagctcagcagaggagcaatgcggccagaccgagttccggtgccag
gacggcgagtgcatcccctccaagtgggtgtgcgacggcagcccagagtgcaaggacgag
tccgacgagtggctggagacctgcaagtcggtgacgtgcaagtcggaggagttcggctgc
gggggccgcgttaaccggtgcatcccggcctcctggcggtgcgacgccaaggcggactgc
gagaacggtgccgacgagcaggattgcgccccgaagcgctgcatggatgaccagttccag
tgccacaacgggcagtgcctctccttggccttcgtctgcgacgaggaccacgactgcgag
gacgggagcgacgaggccgactgccccgccccgacctgcaacccggacatgtttcagtgc
aacagctccctctgcatccccaagctgtgggcctgcgacgacgaccccgactgcccggac
ggctccgacgagtggccccagaactgcggtgggcgggtggcccccacccctgggccctgc
tcgccgctggagttccactgcggctccggggagtgcatccacgcgcagtggcgctgcgac
gggggcttggactgccgggatcgctcggacgaggagaactgtgcgaagcccacgtgccgc
ccggacgagtttcagtgcagcgacggggcctgcgtgcacggcagccggcagtgcgaccag
gagtacgactgcaaagacctgagcgacgaggtcggctgcgagaacgtgactgcctgcgaa
gggcctgacaagtttaagtgccgctctggggagtgcatcgctctggacaaagtgtgcaac
cggcagcgggattgcagggactggtccgacgagcccatcaaggagtgcgatacaaacgag
tgcctggccaacaaaggcggctgctcccacatatgcaaagatctcaagcttggctacgag
tgcctgtgtcctgagggctaccagctggttggccagaagaaatgtgaagatattgacgag
tgtctgaaccccgatacgtgtagccagatctgtgtgaacctggagggaagttacaagtgt
gaatgtaacgaaggttaccagcttgacctcactaccaaaacctgcaaagccattggcacc
atcgcgtacctcttcttcaccaaccgcaacgaagtgcggcgcatgacgctggatcgcagc
gactacggcagcctcatctcccacctgaaacacgtggtggctttggacctggaaatcgcc
gagcgcaaaatctactggtctgacctgtctcagaagaaaatctacagcacccagctagac
caggccgacaactctacccaccacaccactgtgatcagcaccggcctccgagcccccgac
ggcatcgccgtcgactgggtccacgggaacatctactggacggactcagcgctgggcacc
gtctccgtggccgacagggagggtgccaagaggaagaccctgatcgaggagcccggctcc
aagccacgtgccatcgtggtggatcccagccatggcttcatgtactggacggattggggg
acttctgccaagattgccaagagcgggctgaatggcgtggacagcttcccgctggtgaaa
gatggcatcgaatggcccaatggaataactctagatctggtaaaccagcgcctctactgg
gtggactccaagctgcactccatctccagcgtgggcgtcaacgggggcagcaggaaaacg
atcctcgaggaccaggagagactggctcaccctttcgccgtcaccgtctttgaggataaa
gtgttctggacggatatcctcaatgaagccatcttcagcgccaaccgcctgaccggcgcc
aacgtcaccctggtggcggaagacttgttttccccggaagatatcgtcctgtatcacaac
ctgcggcagccggcaggtgtcaactggtgcgagaaccaccctctcccgaacggcggctgc
gagtacctgtgcctcccggccccccagatcacgagccactcgcccaagtacacctgtgcc
tgccccgatgccctgcacctcgctgcagacatgaggagctgcgccaaagatccagcagtc
cccaccgcccccagcaccacgcctctggcccggctgctcaccacgaccagcacgctgaag
cagacagcaaggccaccggctgccacagctggggtgccgaacacgcatgccagggacggc
cctgacctcaccacgtcagagatggtcactctctcccagcaggctcgcaacgatgttgct
gctgagaccaaccaggacaagcacagcggccccactgcgctctccgttgtcttgccactg
gtgctcattagcttaatcgccttcggtgcatttctggtgtggaagaactggcgcctcaag
aacatcaacagcatcaacttcgacaaccccgtctatcagaaaacgacggaggacgaggtt
cacatctgtcggagccaggacggatacacgtacccatcgagacagatcgtcagcttggaa
gacgacgttgcgtga
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