Thiomicrolovo sulfuroxydans: LOH54_04555
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Entry
LOH54_04555 CDS
T11233
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsul Thiomicrolovo sulfuroxydans
Pathway
tsul03030
DNA replication
tsul03410
Base excision repair
tsul03420
Nucleotide excision repair
tsul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOH54_04555 (ligA)
03410 Base excision repair
LOH54_04555 (ligA)
03420 Nucleotide excision repair
LOH54_04555 (ligA)
03430 Mismatch repair
LOH54_04555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsul03032
]
LOH54_04555 (ligA)
03400 DNA repair and recombination proteins [BR:
tsul03400
]
LOH54_04555 (ligA)
Enzymes [BR:
tsul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LOH54_04555 (ligA)
DNA replication proteins [BR:
tsul03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LOH54_04555 (ligA)
DNA repair and recombination proteins [BR:
tsul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LOH54_04555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOH54_04555 (ligA)
MMR (mismatch excision repair)
DNA ligase
LOH54_04555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOH54_04555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UFS63404
LinkDB
All DBs
Position
897704..899656
Genome browser
AA seq
650 aa
AA seq
DB search
MTAETYRESVALLNRYAYHYYVLDNPIASDEEYDRLYHDVLAYEEAHPEAVLPDSPTQRV
GGVPLEGFEKAAHRSRMWSLEDIFDAEGLQKWLERVAKLADNVTFYCEPKFDGASLNLIY
EGGRLVQAITRGDGTIGEEVTQNVKTIRSVPLAIDYEGRIEIRGEVVIFKEEFDAINRER
EAQGEALFANPRNAAAGSLRQLDPKITAARNLVFLPYGIGENTLDIPLLSKRMEWIYALG
FRKPPLHRVCEGYDDIEAIYEEMKVTRDDFAMMLDGMVIKVDQVEAQEDMGYTVKNPRWS
VAYKFPAIEKMTRVRNVILQVGRTGVVTPVAVVEPVDIEGVVVERATLHNFDEIGRKDIH
IGDHVIILRSGDVIPKIIKVIPERRDGTERAVERPTRCPVCGSELLDEGALIKCQNLSCE
ARVVNAIIYFASKQCLNIDGLGDKIVEALYRAGLVKGVIDLYALSLEALLELEGFKEKKS
KNLLDAIEKSRGTACWRFVNGLGIEHIGEVASKQLCDTFGLAFPDATEEALLAIDGFGGE
MAASVLEFVRVNREQIEALRGVVRPAAPAQKTEAAENPFKGKTVVLTGSMSRPRPEIKTD
LEALGAKVVGSVSKKTDYVIYGEDAGSKYDKAVSLGVATLTEDAMKQMLQ
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgaaacctaccgcgaaagcgtggcgctgctgaaccgctacgcctaccactat
tatgtcctcgacaatcccattgcaagcgacgaggagtacgacaggctctaccatgacgtc
ctggcgtacgaggaggctcatccggaagcggtgcttcccgattcgccgacgcagcgggtc
ggcggggtgccgcttgaggggtttgaaaaggccgcccaccgcagccgcatgtggagtctg
gaggatattttcgacgccgaggggctgcagaagtggctggagcgggtcgcaaagcttgcc
gacaacgtcactttctactgcgagccgaagttcgacggggcgagcctcaacctgatctac
gagggcggccgcctcgtgcaggcgattacccgcggcgacggcaccatcggcgaagaggtg
acgcagaacgtcaaaacgatccggagcgtccccctcgccatcgattacgaggggcgtatc
gagatccgcggcgaagtcgtcatcttcaaagaggagttcgacgcgatcaaccgcgagcgc
gaagcgcagggcgaagcgctcttcgccaacccgcgcaacgccgccgcgggaagtctgcgc
cagctcgacccgaagatcacggcggcgcgcaaccttgtcttcctgccttacggcatcggc
gaaaatacgctcgacatcccgctgctgagcaagcggatggagtggatctacgccctgggg
ttccgcaaaccgccgctacaccgcgtctgcgagggctatgacgacatcgaggccatttat
gaggagatgaaagtcacccgggatgatttcgcgatgatgctcgacggcatggtcatcaaa
gtcgaccaggttgaggcccaggaggatatgggctatacggtcaagaacccccgctggtcg
gtggcctacaagttcccggcgatcgagaagatgacccgggtccggaacgtcatccttcag
gtggggcgtacgggcgtcgtcacccccgtggccgtcgtcgaaccggtcgatatcgagggg
gtcgtcgtcgaacgcgcgaccctgcacaattttgacgagatcggacgcaaggatatccac
atcggggaccacgttatcatcctgcgcagcggcgacgtcatcccgaagatcatcaaggtt
attcccgaacggcgcgacggcacggaaagggcggttgagcgtccgacgcgctgcccggtc
tgcggcagtgaactgctggacgaaggggcgctgatcaagtgccagaacctctcctgcgaa
gcacgggtcgtgaatgccatcatctatttcgcctccaagcagtgcctcaacatcgacggc
ctcggcgacaagatcgtcgaggccctctaccgggcggggctggtcaaaggcgtcatcgat
ctctacgcactttcgctcgaagcgctgctggagctcgaggggttcaaagagaagaagagc
aagaatctgctcgacgccattgaaaagagccggggcacggcgtgctggcgctttgtcaac
gggctgggaatagagcacatcggcgaggtcgcttcgaaacagctctgcgacaccttcggc
ctggcgttccccgacgcgacggaggaggcgctgctcgccatcgacggtttcggcggggag
atggcggcgtcggtgctcgaatttgtccgggtcaaccgggaacagatcgaagcgctgcgc
ggtgtcgtccggccggcggccccggcgcagaagaccgaagcggcggagaatcccttcaag
gggaagacggtcgtgctcaccggctcgatgagccgtccccgtccggagatcaaaaccgac
ctggaagccctgggggccaaggtcgtgggcagcgtatcgaaaaagaccgattacgtcatc
tacggcgaggacgccggcagcaagtacgataaggcggtgtcgctgggcgtggcgaccctt
acggaagatgcgatgaaacagatgctacaatag
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