Terricaulis silvestris: DSM104635_02793
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Entry
DSM104635_02793 CDS
T06781
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsv
Terricaulis silvestris
Pathway
tsv03030
DNA replication
tsv03410
Base excision repair
tsv03420
Nucleotide excision repair
tsv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM104635_02793 (ligA)
03410 Base excision repair
DSM104635_02793 (ligA)
03420 Nucleotide excision repair
DSM104635_02793 (ligA)
03430 Mismatch repair
DSM104635_02793 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsv03032
]
DSM104635_02793 (ligA)
03400 DNA repair and recombination proteins [BR:
tsv03400
]
DSM104635_02793 (ligA)
Enzymes [BR:
tsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM104635_02793 (ligA)
DNA replication proteins [BR:
tsv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM104635_02793 (ligA)
DNA repair and recombination proteins [BR:
tsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM104635_02793 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM104635_02793 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSM104635_02793 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM104635_02793 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
MutL
Nlig-Ia
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QGZ95938
UniProt:
A0A6I6MR59
LinkDB
All DBs
Position
complement(2684893..2687223)
Genome browser
AA seq
776 aa
AA seq
DB search
MSDKAIDKLTAKEAAGELERLAAEIARHDKLYHGKDAPEISDAEYDKLRNRNNAIEARFP
DLVREDSPTLRVGSAPTEKFGKVRHAVPMLSLDNAFDADDARSFVQRVQRFLNLGTPPII
TAEPKIDGLSASLRYENGKFVQGATRGDGREGEDVTANLRTIGDIPHTIKGAPAVLEVRG
EVYMEKAAFAKMNAKFEAEGKKTYVNPRNSAAGVLRQLDAKVTATWPLKFFAHGWGELSE
PLADTQFDSVQRLAKLGFPLAGIKRAKNAEELLAIYESILAGREKFAYEIDGVVYKVDSL
ALQQRLGFVSRSPRWAIAHKFAAEQQQTILEGIDIQVGRTGSLTPVGRLKPVFVGGVTVT
NVTLHNADYIRSVGADGGPIRGGKDLRVGDTVTVQRAGDVIPQIVDVLDDDAHKRRRRFD
FPKKCPVCGSHVARELEPGEEGVIARCTGGLNCPAQAVERLIHFVARRALDIEGLGSKQI
EEFYELGWVKEPADIFRLGEHRDELTTREGYGEKSVTNLLASIDARREPEFARFLYGLGI
RDIGETTAGVIARRFESWGAFEAAMKAAVKARPGEAYEALERVPGVGGGARAALLTAAPA
LKASAYLFDAGDAPKIKGVTHKAWDGLIGAFGTMPEAIAAIKAAAKQAPGEDFLELERVD
GVGPVAADHLVDFFSEPHNTDALKRLLKHVTPQDQPRAATSSKVAGLTIVFTGTLEKMTR
DEAKARAISLGAKVSGSVSAKTNLVVAGPGAGSKLAEAEKHGVKVIDEDAWIELSR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaaagcaatcgataagctcacggcaaaagaagcggcaggcgagcttgagcgc
ctcgccgccgagattgcgcgccacgacaagctctatcacggcaaggacgcgccggaaatt
tccgacgccgagtacgacaaactccgcaatcgcaacaacgcgatcgaagcgcgattcccg
gatctggtgcgcgaagatagtcccacactccgcgtcggttctgcgccgacggagaagttc
ggcaaagtccgccacgccgtgccgatgctctcgctcgacaatgcgttcgacgccgatgac
gcacggagcttcgttcagcgcgtccagcgtttcctcaatctcggcacgccgccgatcatc
accgccgagccaaagatcgacggactctcggcgtcgctccgctacgaaaacggcaagttc
gtgcaaggcgccacgcgcggcgatggccgcgaaggcgaggacgtcaccgccaatctccgc
accatcggcgacattccgcacaccatcaaaggcgcgcccgccgtgctcgaagtgcgcggt
gaagtctatatggagaaagccgcgttcgcgaaaatgaacgcgaagttcgaagccgagggc
aagaagacgtacgtcaatccgcgcaactctgcggcgggcgtgctgcgccagctcgatgcg
aaagtaaccgcgacgtggccgctgaaattcttcgcccacggctggggcgagctgtccgag
ccgctcgccgatacgcaattcgattctgtgcagcgcttggccaagcttggcttccccctt
gccggcatcaagcgcgccaagaacgccgaagaattgctggcgatctacgagagcatcctc
gctggccgcgagaagtttgcctatgagatcgacggcgtcgtttacaaagtagactcgctc
gcgctgcagcagcgccttggcttcgtctcgcgcagtccgcgttgggccatcgcgcacaag
ttcgcggcagagcagcagcaaaccattctcgaaggcatcgatatccaagtcggccgcacc
ggttcactgacgccggtggggcgcttgaagccggtgttcgtcggcggcgtcaccgtcacc
aacgtgacgctgcacaacgccgactatatccgcagcgttggagccgatggcggcccgatc
cgaggcggcaaggatctccgcgttggcgatactgttacggtgcaacgcgccggcgacgtg
atcccgcagatcgttgacgtgctggacgacgacgcacacaaacgtcgtaggcgtttcgat
tttcccaagaagtgccccgtctgcggcagccatgtcgcgcgcgaacttgagccaggcgag
gagggcgtcatcgcccgctgcaccggcggcctgaattgcccggcgcaagcggtggagcgc
ctgatccatttcgtcgcgcgccgcgcgctggacattgaaggtctgggctcaaagcagatc
gaagaattctacgaactgggttgggtcaaggagcccgcggatatcttccgcctcggcgaa
catcgcgatgaattgaccacgcgcgaagggtacggcgaaaaaagcgtcaccaatttgctc
gcctcaatcgacgcgcgccgcgaaccggagttcgcgcgcttcctctacggcctcggaatc
cgcgacatcggcgaaaccaccgctggcgtcattgcgcgacggtttgaaagctggggcgcg
ttcgaagcggcaatgaaggccgctgtgaaggcgcgcccaggcgaagcgtatgaagcgctg
gagcgcgtgcctggtgtcggcggcggcgcgcgtgcggcattgctgacggctgcaccggcg
ttgaaggcgagcgcttatctgttcgatgccggtgacgcaccgaagatcaagggcgtgacg
cataaggcttgggatggcttgatcggcgccttcggcacgatgccagaagctatcgccgcg
atcaaagctgccgccaaacaggcgcctggcgaggattttctcgagctcgagcgagtcgat
ggcgtcggccccgtcgctgccgatcacctggtcgattttttctccgagccgcacaacacc
gatgcgctgaagcggctgctgaagcacgtcacgccgcaggatcagccgcgcgcggcgact
tcaagcaaagtcgccggcctcaccatcgtgttcaccggcacgctggagaaaatgacacgc
gacgaagccaaagcgcgcgcgatttcgctcggcgccaaggtatcgggcagcgtgtcggcg
aagaccaatctagtcgtcgccggcccaggcgccggctctaagctggcggaagccgaaaag
catggcgtcaaggtgatcgacgaagacgcttggatcgaactcagccgctaa
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