Thiobacillus sedimenti: VA613_03465
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Entry
VA613_03465 CDS
T10461
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03030
DNA replication
tsw03410
Base excision repair
tsw03420
Nucleotide excision repair
tsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VA613_03465 (ligA)
03410 Base excision repair
VA613_03465 (ligA)
03420 Nucleotide excision repair
VA613_03465 (ligA)
03430 Mismatch repair
VA613_03465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsw03032
]
VA613_03465 (ligA)
03400 DNA repair and recombination proteins [BR:
tsw03400
]
VA613_03465 (ligA)
Enzymes [BR:
tsw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VA613_03465 (ligA)
DNA replication proteins [BR:
tsw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VA613_03465 (ligA)
DNA repair and recombination proteins [BR:
tsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VA613_03465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VA613_03465 (ligA)
MMR (mismatch excision repair)
DNA ligase
VA613_03465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VA613_03465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WRS39939
LinkDB
All DBs
Position
711806..713884
Genome browser
AA seq
692 aa
AA seq
DB search
MKPDVLARAAALRQEIERHNYAYYVLDAPTIPDAEFDRLFRELQELEAAHPELATPDSPT
QRVGGRPLDAFPKVRHAVPMLSIRTETDTEASGARAFDARVRKELGLADGDPPVEYNAEL
KFDGLAINLRYEHGVLVHAVTRGDGETGEDVTQNVRTVHAIPLRLRADKPPAVLEVRGEV
FMRRDAFERYNARQRAAGRPTLVNPRNGAAGSIRQLDPRLAAQRPLSFFAYGLGEVRAWP
HAPATHSATLDALEKLGVPVCAERRVCRGADALVAFHAEIAARRDRLPFDIDGVVYKVNR
LDLQRELGFVTREPRWAVAHKYPAQEQLTVVEAIEVQVGRTGALTPVARLAPVFVGGVTV
TNATLHNQDEIDRKDVRVGDTVIVRRAGDVIPEVVSVVPERRPQPAPPRFDLLKSFPVCP
ECGSHVVRLEDEAVARCTGGLYCPAQRKQALLHFASRRAMDIEGLGDKLVDQLVERGLVH
TPADVYRLDLATLAGLERMAEKSAANLLVAIEASKTTTLARFIFALGIRNVGETTAKDLA
RHFGSLDTLLAATEDELIAVRDVGPIVAQSIVQFFAERHNLDVVRKLRDAGVHWPESAGM
QQSAGILAGKTLVLTGTLPTLTRDAAKEKIEAAGGKVAGSVSKKTDYVVAGEEAGSKLAK
AQELGVTILDEAGLLALLGPAHRKPGQQGFDF
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgatgttctggcgcgcgctgccgcgctgcgccaggagatcgaacgccacaac
tacgcctactatgtcctcgacgcgccgacgattccggacgcggaattcgatcggctgttc
cgcgaactgcaggaactcgaggcggcccatcctgaacttgccacgcccgattcgcccacc
cagcgtgtcggcggtcgcccgctcgatgcctttcccaaggtccgccacgccgtgccgatg
ctgtcgatccgcaccgagaccgacaccgaggcgagcggcgcgcgcgccttcgacgcgcgg
gtgcgcaaggagctcggcctcgccgacggtgatccgccggtcgaatacaacgccgagctg
aaattcgacggcctggcgatcaatctgcgctacgagcacggcgtgctggttcacgccgtg
acgcgcggcgacggcgagacgggcgaggacgtcacccagaacgtccggaccgtccacgcc
attccgctgcgcctgcgcgccgacaagccgccggccgtgctcgaggtgcgcggcgaggtg
ttcatgcggcgcgacgctttcgaacgctacaacgcccggcagcgtgccgcgggcagaccc
acgctggtcaacccgcgcaatggcgccgcaggcagcattcgccagctcgatccccggctt
gccgcccagcgtccgctgtcgttcttcgcttacggcctcggcgaggtgcgggcgtggccg
catgccccggcgacccacagcgcgacgctcgacgcactggaaaagctgggcgtgccggtg
tgcgccgagcgtcgcgtctgccgcggcgcggacgcgctcgtcgcctttcatgccgagatc
gcggcgcggcgcgaccggctgccgttcgacatcgacggcgtggtgtacaaggtcaaccgg
ctcgatctgcagcgcgaactcggcttcgtcacgcgcgagccgcgctgggcggtggcgcac
aagtatccggcgcaggagcagctgaccgtggtcgaggccatcgaggtccaggtcgggcgg
accggcgcgctgacgccggtcgcgcgcctcgcgccggtgttcgtcggcggcgtgacggtg
accaatgccaccctgcacaaccaggacgagatcgaccgcaaggacgtgcgcgtcggcgat
acggtcatcgtgcggcgggccggcgacgtcattcccgaggtcgtgtccgtggtgccggag
cgccgtcctcagccggcgccaccgcgcttcgatctgctcaagagctttccggtctgcccg
gagtgcggctcgcacgtggtgcgcctcgaagacgaagcggtcgcgcgctgtaccggcggc
ctctattgtccggcgcagcgcaagcaggccctgctccacttcgcgtcgcgccgcgcgatg
gacatcgaaggcctgggcgacaagctggtcgaccagctcgtcgagcgcggcctggtgcac
acgccggccgatgtttaccgcctcgacctcgctacgctcgcaggccttgagcgcatggcc
gaaaagtcggcggccaatctgctggtggcgatcgaagccagcaagaccacgacgctggcg
cgtttcatcttcgcgctgggcatccgtaatgtcggggaaaccaccgccaaggacctggcc
cgccatttcggctcgctcgacacgctgcttgccgcgacggaggacgagctgattgcggtg
cgcgacgtcggccccatcgtcgcgcagtcgatcgtgcagttcttcgccgagcggcacaac
ctcgacgtggtccgcaagctgcgtgacgccggcgtgcactggccggaatcggccgggatg
cagcagtcggctggtatcctagcgggcaagacgctggtgctgaccgggacgctgccgacg
ctgacccgcgacgccgccaaggagaagatcgaggccgcaggcggcaaggtggcagggtcg
gtgtcgaagaagaccgactatgtcgtcgcgggcgaggaggccggcagcaagctggccaag
gcgcaggaactcggggtgacgatcctcgacgaggccgggctgctggccctgctggggccg
gcgcaccggaagcccggccagcagggttttgatttctga
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