Trichothermofontia sichuanensis: OOK60_15065
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Entry
OOK60_15065 CDS
T09010
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsz
Trichothermofontia sichuanensis
Pathway
tsz03030
DNA replication
tsz03410
Base excision repair
tsz03420
Nucleotide excision repair
tsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OOK60_15065 (ligA)
03410 Base excision repair
OOK60_15065 (ligA)
03420 Nucleotide excision repair
OOK60_15065 (ligA)
03430 Mismatch repair
OOK60_15065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsz03032
]
OOK60_15065 (ligA)
03400 DNA repair and recombination proteins [BR:
tsz03400
]
OOK60_15065 (ligA)
Enzymes [BR:
tsz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OOK60_15065 (ligA)
DNA replication proteins [BR:
tsz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OOK60_15065 (ligA)
DNA repair and recombination proteins [BR:
tsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OOK60_15065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OOK60_15065 (ligA)
MMR (mismatch excision repair)
DNA ligase
OOK60_15065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OOK60_15065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
UZQ53799
LinkDB
All DBs
Position
complement(3546779..3548980)
Genome browser
AA seq
733 aa
AA seq
DB search
MLRVTMVPRSTSSDQTSSFPAPADADVAVRQRVQELRRLLTEASYAYYVLDAPIMEDSVY
DQLYRELQDLETHHPDLITPDSPTQRVGEKPATQFTSVQHAVPLYSLENAFNLEEFTNWQ
GRWQRVLGAQAGGDRSPSIPQMGGVREVDGSAPDESGQPAPTRLTLPDYVCELKIDGSAL
ALTYEDGVLVRGATRGDGTMGEEITQNVRTIRSIPLRLQVEKPPRRVEVRGEAFLPLTVF
DQINQERKAEGLPLFANPRNAAAGTLRQLDSRIVADRKLDFFAYTLHILDEAVDLPPTQW
DCLELLQRFGFRVNPERQRCQGLEAVRDYYDRWATARFQLPYLTDGVVVKLNSLALQEQL
GFTQKFPRWAVALKYPAEEAPTKVERVVVQVGRTGALTPVAEFQSVQLAGTTVSRASLHN
RDRLLELDLHLGDTVVVRKAGEIIPEVVRVLPELRPPQAERVVLPDRCPECGEPVVQPAG
EAVTRCVNASCPAIVRGALVHWASRDALDINGLGEKLVQQLVAAQLVQSVADLYQLEAEP
LAQLERLGQKSAQKLVQAIAASKQKPWSRVLYGLGIRHVGSVNAQALAAAFPDVTQLATA
SVDAIAAVYGIGPEIAQSVYEWFQIPANQHLIERLQAAGVQLQAAKGQIAPASNPTLAGK
TFVITGTLPTLTREEAKALIQAAGGKVTESVSRKTHYLVVGENAGSKLTKAQGLGIPCLT
EADLLALMGDVDR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
gtgctaagggtgacgatggtgccgcgatcgacctcttctgaccaaacttcctctttcccg
gctcctgccgatgctgatgtggcggttcgccaacgggtgcaggaactccggcggctgctc
acggaggctagctatgcctactatgtgctggatgccccgatcatggaggatagtgtctat
gaccagctttatcgcgaacttcaagatctggaaacgcaccatccggatctgattacgcct
gacagtccaacgcaacgggtgggggaaaaaccggcaacgcaattcacgtcggtgcaacac
gcagtgcccctctatagtttggagaatgcgtttaatctggaggaatttacgaattggcag
gggcgctggcaacgggtgttgggggcacaagcggggggcgatcgatcaccgtctatcccc
cagatggggggggttagggaggttgacggttcggcaccggatgagtctgggcaacccgcc
cctacccggttgaccttgccggattatgtgtgtgaactgaagattgatgggtcggcgctg
gcactgacctatgaagatggggtgctagtgcggggggcaacacggggcgatggcacgatg
ggggaagaaattacccagaatgtgcgcacgattcggagtattcccctgcggttgcaggtc
gagaagccgccgcgacgggtggaggtgcggggggaggcgtttttgccgctgacggtgttt
gaccaaattaaccaggaacgcaaagcggaggggctgcccttgtttgcgaatcctcgcaat
gcggcggcggggacattacggcaattggattcccgcattgtggccgatcgcaagctggat
ttctttgcctatacgcttcatattctggatgaggcggttgacctgcccccaacccagtgg
gactgcctggaattattacaacgatttggctttcgggtgaatccggaacgccaacgctgc
cagggattagaggccgtgcgggattattacgatcgctgggcaacggcccggttccagttg
ccctatctcaccgatggtgtggtggtgaagctgaattccctggctctgcaagaacaattg
ggttttacgcaaaaatttccccgctgggcggtggcgctgaagtatcccgcagaggaagcc
ccaaccaaggtggagcgggtggtggtgcaggtggggcgcacgggggcgctgacgccggtg
gcggagtttcagtcagtgcagttggcagggacaacggtgagtcgggccagtctccataac
cgcgatcgcctgctggagttggatttgcatctcggcgatacggtggtggtgcgcaaggcg
ggagaaattatcccggaggtggtgcgggtgttgccggaattgcggcctccccaggcggaa
cgggtggtcttgcccgatcgctgtcccgaatgtggcgaacccgtggtgcaaccggcgggg
gaggcggtcacccggtgtgtgaatgcgtcctgtcccgcgatcgtgcgaggggcgttggtg
cattgggccagtcgcgatgccctggatatcaatgggctgggggaaaagttagtgcagcaa
ttggtcgcggcacagttggtgcaatcggtagcggatttatatcagctagaggcagaaccc
ctggcccagttggagcgcttggggcaaaagtcggcgcaaaagttggtgcaggcgatcgcg
gcatcgaagcaaaagccctggtcgcgggtgctctacgggttggggattcgccatgttggc
agcgtgaatgcccaggcgttggcggcagcgtttccggacgtgacccaattggcaacggcc
agtgtagacgcgatcgcagcggtctatggcattggtcccgaaattgcccaatcagtatac
gagtggttccagatcccggccaatcaacacttaattgaacggttacaggcagcaggcgtg
cagttgcaggcggcgaagggtcagattgctcctgccagcaacccaaccctagcgggcaaa
acctttgtaatcaccggcacgctaccaacactgacgcgcgaggaggccaaggcattgatt
caggcggcagggggtaaggtcacggagtcagtgagccgcaagacgcattatctagtggtg
ggggaaaacgcaggatcgaagctgacgaaggcgcaggggttggggattccctgtttgacg
gaggcggatttgttggcgctgatgggggatgtcgatcggtag
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