Thalassospira tepidiphila: MACH01_28930
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Entry
MACH01_28930 CDS
T09750
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ttb
Thalassospira tepidiphila
Pathway
ttb03030
DNA replication
ttb03410
Base excision repair
ttb03420
Nucleotide excision repair
ttb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MACH01_28930 (ligA)
03410 Base excision repair
MACH01_28930 (ligA)
03420 Nucleotide excision repair
MACH01_28930 (ligA)
03430 Mismatch repair
MACH01_28930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttb03032
]
MACH01_28930 (ligA)
03400 DNA repair and recombination proteins [BR:
ttb03400
]
MACH01_28930 (ligA)
Enzymes [BR:
ttb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MACH01_28930 (ligA)
DNA replication proteins [BR:
ttb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MACH01_28930 (ligA)
DNA repair and recombination proteins [BR:
ttb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MACH01_28930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MACH01_28930 (ligA)
MMR (mismatch excision repair)
DNA ligase
MACH01_28930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MACH01_28930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_ligase
PSII_Pbs27
Motif
Other DBs
NCBI-ProteinID:
BDW90126
LinkDB
All DBs
Position
3186907..3189006
Genome browser
AA seq
699 aa
AA seq
DB search
MSAEHASNMSELPELPSSSTEARKQHAEISERIRSYNEAYHVNDDPLVSDATYDALFNRL
IELESHYPTLKKNSPTQEVGAAPAEGFAKVKHARPMLSLGNAFSREDIVDFLARIRRFLN
LTAHSPVEVVGEPKIDGLSLSLRYENRQLVTAATRGDGSEGEDVTANVAHIDDIPKTLPD
DAPDVVEIRGEVYMARSAFQKLNATQAETGGKTFANPRNAAAGSLRQLDPSISAKRPLRF
FAYSFGELSESLAQTQWNFLQKVEGWGFVINPLTRLLHNADDIMAFYDELATQRPDLDYD
IDGIVYKVNDFELQLRLGFVSRSPRWAIAHKFPAEKARTRVNAIEVQVGRTGALTPVARL
EPVTVGGVVVSNATLHNRDEIERLGVRVGDMVVIQRAGDVIPQVVEVILDERPEETSEYQ
FPDTCPKCGSHAMREEGEAVTRCTGGLICPAQAVERLKHFVSRTAFDIDGLGAKNVEAFF
ELGWLKSPGDIFRLESDHGDAIRKLEGWGEKSATKLFDGINERRTIGLDKFIYALGIRQI
GQATAKLLARHYGSLAEWRSAMVAANEADSEALRELINIDQIGPGVAKDLIEFMAEDHNR
EVLDDLQGLLTITDVEAPQVSDNPVNGKTVVFTGKLELFSRNEAKVKAESLGAKVAGSVS
AKTDYLVAGPGAGSKLKKAEELGVTVLDEQGWLDLIATE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgaacacgcgtcaaacatgtccgaacttcccgaattgccgtcttcgagcacg
gaggcgcgtaaacaacatgccgaaatttccgaacgtatccggtcttataacgaggcctat
cacgttaatgacgacccgctggtttcggatgcgacatatgatgcgctgttcaatcgcctg
atcgaacttgaatcccactatccgacgcttaagaaaaacagcccaacacaggaagtcggt
gctgccccagccgaaggctttgccaaggtcaagcatgcccgccctatgctgtcacttggc
aatgcgttttcgcgcgaagacatcgtcgattttcttgcccgtattcgtcgcttcctgaac
ctgacagcgcacagcccggtcgaagtggttggcgaacccaagatcgatggtctttcgctt
tcgctgcgttacgaaaaccgccaactggtcacggctgccacccgcggtgacggctcggaa
ggcgaagacgttaccgccaatgtcgcccatattgacgacatccccaagacgcttcccgat
gatgcgcccgatgttgtcgaaatccggggcgaggtttatatggcgcgctctgcgttccaa
aaactgaacgcaacacaggccgaaaccggcggcaaaacctttgccaatccgcgcaacgct
gcagccgggtcgcttcgccagcttgatccatcgatcagtgccaaacgcccgcttcgtttc
tttgcctatagctttggcgaactgtccgaaagcctcgcccagacgcagtggaatttcctg
cagaaggtcgaaggatggggctttgtcatcaatccgctgacccggctgcttcataatgcc
gatgacatcatggcgttctatgacgaactggcaacgcagcgcccggaccttgattacgac
attgatggtattgtttataaggtcaatgactttgaactgcagcttcgcctcggcttcgtc
agccggtcaccacgctgggcgattgcgcacaaattccccgccgaaaaggcccgcacccgc
gtcaatgccatcgaagtacaggttggacgcaccggtgcactgaccccggttgcacgcttg
gagccggtcaccgtcggcggtgtggtggtatccaacgcgaccctgcataaccgtgacgaa
atcgaacgtcttggcgttcgggttggcgacatggtggtcattcagcgtgccggcgatgtc
atcccgcaggtggttgaagtcatccttgatgaacgcccggaagagaccagcgaatatcag
ttcccagatacatgcccgaaatgcggcagccacgccatgcgcgaagaaggtgaagccgtc
acccggtgtactggcgggctcatttgcccagcacaggcggttgaacgccttaagcacttc
gtatcgcgcacggcctttgatatcgatggcctgggcgccaagaatgtcgaggcgttcttt
gaactgggttggctgaagtcgcctggcgatattttccgccttgaaagcgatcacggggat
gccatccgcaagcttgaaggttggggcgaaaaatccgcaaccaagctgtttgacggcatc
aatgagcggcgcaccatcgggctcgacaaatttatctatgcacttggcattcgccagatc
ggtcaggcaaccgcaaagcttctggcacgccattatggatcgcttgccgaatggcgcagc
gccatggttgcggccaatgaagccgacagcgaagcccttcgcgaactgatcaacattgat
cagatcgggcctggtgttgccaaggacctgatcgaattcatggccgaagatcataaccgc
gaggttcttgatgatctgcaagggcttttgaccattaccgatgtcgaagccccgcaagtc
agcgacaatccggtcaatggcaaaacggtcgtctttactggcaagctcgagctgttttca
cgtaatgaagccaaggtcaaggccgaaagccttggtgcaaaggtcgccggatccgtatcg
gcaaaaaccgattatctggttgcaggaccgggtgcgggctccaaattaaagaaagcagaa
gaattaggtgttacagtgcttgatgaacagggatggcttgatctgattgccacggaataa
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