Caldanaerobacter subterraneus subsp. tengcongensis: TTE0605
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Entry
TTE0605 CDS
T00081
Symbol
Lig
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tte
Caldanaerobacter subterraneus subsp. tengcongensis
Pathway
tte03030
DNA replication
tte03410
Base excision repair
tte03420
Nucleotide excision repair
tte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TTE0605 (Lig)
03410 Base excision repair
TTE0605 (Lig)
03420 Nucleotide excision repair
TTE0605 (Lig)
03430 Mismatch repair
TTE0605 (Lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tte03032
]
TTE0605 (Lig)
03400 DNA repair and recombination proteins [BR:
tte03400
]
TTE0605 (Lig)
Enzymes [BR:
tte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TTE0605 (Lig)
DNA replication proteins [BR:
tte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TTE0605 (Lig)
DNA repair and recombination proteins [BR:
tte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TTE0605 (Lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TTE0605 (Lig)
MMR (mismatch excision repair)
DNA ligase
TTE0605 (Lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TTE0605 (Lig)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
BRCT_2
RNA_lig_T4_1
Prot_ATP_ID_OB_C
Motif
Other DBs
NCBI-ProteinID:
AAM23875
UniProt:
Q8RC42
LinkDB
All DBs
Position
607685..609685
Genome browser
AA seq
666 aa
AA seq
DB search
MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSP
SQRVGGEPLDEFEPFTHIVPMLSLANAFTAEEIKEFDRRVKEAVGEVEYVVEPKIDGLSV
ELVYENGMFTVGSTRGDGIVGENVTPNLKTIKSIPLRLKDSVNLVVRGEVFMPKASFAKL
NEERAERGESLFANPRNAAAGSVRQLDPKVTAKRDLDIFIFNLQRIEGRDFKTHVEALEF
LKEQGFKVIPLIKKCTTIEEVIKAIEELGEMKDSLPYDIDGAVIKVNELDKREILGQTAK
DYRWAIAFKYPAEMKKTKIVDIVVQVGRTGALTPTAVLEPVVISGSVVSRATLHNEDYIK
EKDIRIGDTVLVHKAGGIIPEVVEVVKEERTGDEKAFVMPDKCPECGALAVRLPGEAVRR
CTGLNCPAQIARRIIHFASKDAMDIEGLGPAIISQLLSKGLIQNVADLYYLKYRDLITLE
RMGDKSARNLLEAIEKSKKRDLDRLLFGLGINLIGSKAAQVIAEHFKSMDNIMKAKYEDF
LELPDIGPKMARSIVTFFSEEQNRRVVERLKEAGVNMEKLSTGKVSNIFEGKIFVLTGAL
KNYTRDEAARLIVERGGKVTNSVSKKTDYLIVGADPGSKLKKAQELGVKIINEEQFEAML
KGDIQP
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatagggaagaggcaagaaagaggatagaggagttaagggaaaaaataaactatcac
aactacaggtattatgtgttggaccagccagaaatttcagactatgagtatgatatgctt
atgagagaactcatagaattggaagaaaaatatcctgagtttaagactccagactctccc
tctcagagggtaggaggagagccacttgatgagtttgagccttttactcacattgttcca
atgttgagcttggccaatgcttttacggcagaagagattaaggaatttgacagaagggta
aaagaggcggtaggggaagtagagtacgtagtagagcctaaaattgacggtttgtctgtg
gagctggtgtatgaaaatggcatgttcacagtgggatctactagaggagacggaattgtg
ggggagaatgtcactccgaatttgaagaccataaagtccattcctttaaggcttaaagat
tctgtgaacctggttgtaagaggagaagtttttatgccaaaagcttcttttgccaagctc
aacgaagagagagccgaaagaggagaatccctttttgcaaatcccaggaatgctgcagct
ggttctgtgaggcagttagaccctaaagtcactgcaaaaagggacctagacattttcatt
tttaaccttcagaggattgaaggaagagatttcaagactcatgtggaagccttagaattt
ttgaaagaacagggatttaaagtaattcctcttattaaaaaatgcactacaatcgaagaa
gtcatcaaagctatagaagagctaggggagatgaaagattctttgccgtacgatatagac
ggcgcagtgataaaagtgaatgaacttgataaaagggagattttggggcagactgctaaa
gactacagatgggctatagcatttaaatatcctgcagagatgaagaaaacaaaaatagtg
gatatagtggtacaagtgggtaggactggagccttaactcctacggctgtcctcgagcct
gttgttatttctggttctgtggtgagcagagctactcttcacaatgaagattacataaag
gagaaggacatacgaataggggatactgtgcttgtgcacaaagcaggaggcataattcca
gaggtagtggaagtggttaaagaagagagaacaggcgatgaaaaggcatttgtcatgcct
gacaaatgccctgagtgcggcgctttggctgtaaggcttcctggagaggcagtgagaaga
tgtacaggccttaactgtcctgctcagattgcgagaaggataatccactttgcttcaaag
gatgctatggacatagaaggattgggccctgctataataagccagctgctttcaaaaggg
cttatacaaaatgtagcagacctttactacctcaagtacagggatttaattactttggag
aggatgggagataagtctgctagaaatttgctggaagctattgaaaagagcaagaaaaga
gacttagacaggttgctttttggacttgggataaacttgataggcagtaaagcggcacag
gtgattgcagagcatttcaagagcatggacaacataatgaaagcaaaatacgaggatttt
cttgaacttccggatattggacccaaaatggcaagaagtatagttactttcttttctgaa
gagcaaaacagaagagtggttgaaaggttgaaagaagcgggagtcaatatggagaagctc
tccacaggtaaagtgagcaatatatttgaaggcaagatttttgtgctgacaggagcgctt
aaaaattacactagagatgaggctgcaagacttattgttgagagagggggcaaagttact
aactctgtgagcaaaaagaccgactatctaattgtgggtgctgaccctggctctaagctt
aaaaaagcacaggaacttggagttaagataattaacgaagagcagtttgaagccatgcta
aaaggcgatatccaaccgtag
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