Tenacibaculum tangerinum: P8625_01120
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Entry
P8625_01120 CDS
T09624
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ttg
Tenacibaculum tangerinum
Pathway
ttg03030
DNA replication
ttg03410
Base excision repair
ttg03420
Nucleotide excision repair
ttg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P8625_01120 (ligA)
03410 Base excision repair
P8625_01120 (ligA)
03420 Nucleotide excision repair
P8625_01120 (ligA)
03430 Mismatch repair
P8625_01120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttg03032
]
P8625_01120 (ligA)
03400 DNA repair and recombination proteins [BR:
ttg03400
]
P8625_01120 (ligA)
Enzymes [BR:
ttg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P8625_01120 (ligA)
DNA replication proteins [BR:
ttg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P8625_01120 (ligA)
DNA repair and recombination proteins [BR:
ttg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P8625_01120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P8625_01120 (ligA)
MMR (mismatch excision repair)
DNA ligase
P8625_01120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P8625_01120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
OAS1_C
Auto_anti-p27
5_3_exonuc
AphA_like
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WGH75793
UniProt:
A0ABY8L6G1
LinkDB
All DBs
Position
261303..263300
Genome browser
AA seq
665 aa
AA seq
DB search
MTVQEKIQQLREELRIHNHNYYVLDSPTISDYEFDIQLKELQRLEDENPAYFDPNSPTQR
VGGEVTKNFETVTHKHRMYSLDNSYSKEDLLDWEKRIQKILGTDQIAYTCELKYDGASIN
LTYENGQFTQAVTRGDGFQGDNVTTNIRTIKSIPLVLNGDFVADFEMRGEIILPLEGFNK
MNEERVANGEEPYRNPRNTASGSLKLQDSSEVAKRPLDCLLYQVVTNERKYASHFESLEA
ARKVGFKIPDTIVLATSIDEVLNFVNEWDVKRHTLPYETDGVVVKVNSYQQQDELGYTSK
APRWAIAYKFKAEQVSTILHEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDVRVGDTVFVEKGGEIIPKIIGVDLTKRPADSVPTQYATHCPECHTELVRTEGDAKHY
CPNEFGCAPQITGRIKHFISRKAMDIDGLGGETVDLLRKEGLIKNYADLYDLTVEQVIPL
ERMAEKSAQNMIDGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLLSADFET
LIAVDEIGDRIAQSIIDFSNDAGNIELVNRLKSYGVQLEVSAESLEGQTDKLAGNVFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTTYIVAGDNMGPSKLTKAENLGIPIISEQDF
LEMIG
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacagttcaagagaaaattcaacagttaagagaagagttacgaatacacaatcataat
tattacgtgttagatagcccaacaatatcagattatgagtttgatattcaattaaaagag
cttcaacgattagaagacgaaaatcctgcatattttgacccaaattcgccaacacagcga
gtaggaggagaagtaactaaaaattttgaaactgttacgcataagcacagaatgtattca
ttagataattcgtattcaaaagaagatttgttggattgggaaaaacgaatccagaaaatt
ctaggtaccgatcaaatagcatatacctgtgagttgaaatacgacggagcttctattaac
cttacctatgaaaatggacagtttacacaagcagtaactcgtggagatggttttcaagga
gataacgtaacgaccaatattcgcaccataaaatcgattccattagtgcttaatggcgat
tttgttgccgactttgaaatgcgtggagagattatcttgccgttagaaggcttcaataaa
atgaatgaagaacgcgtagcaaatggagaagaaccctacagaaatccgcgtaataccgct
agtggaagtttaaaattacaagacagttccgaagtagcgaaacgtccgctagattgttta
ctatatcaagtggtaaccaacgagcgcaaatacgcctcacattttgaaagcttagaagcg
gctagaaaagtaggattcaaaattccagataccattgttttggcaacgtcaattgatgag
gtgttgaattttgtaaacgagtgggatgtaaaacgccacacactaccctatgaaaccgat
ggggttgtggtaaaagtaaattcataccaacaacaagacgagttaggctatacctcaaag
gcacctcgttgggcaatcgcctataaatttaaagcagaacaggtgtcaaccatattgcat
gaaattacctaccaagtaggacgcacaggcgcaattacacccgtagcaaatttagaacct
gtacaacttgcaggaaccattgtaaaaagagcttctttacacaatgcagatcaaatagaa
aaattagatgtgcgagtaggagacactgtttttgtggagaaaggaggagaaattattccg
aaaatcataggagttgatttaacgaaaagaccagcagactctgtgcccacgcaatatgca
actcactgccctgaatgtcatacagaactcgtaagaaccgaaggagatgccaagcattac
tgtccgaacgaatttggatgcgccccgcaaattacaggaagaataaaacattttatcagc
cgaaaagccatggatattgatggtttagggggcgaaacggtggatttattacgtaaagaa
ggactgataaaaaattatgcagatttatatgatttaacggtagaacaagtcattccctta
gagcgtatggctgaaaaatctgcgcaaaatatgattgacggaattgaaaaatcaaaagaa
attccgtttgaaaaagtgttgtttgccttaggaattcgatttgtaggagaaaccgtagcc
aaaaagttagccaaacactttaagtccatagataatttgttaagtgctgattttgaaacg
ctcattgcggtagatgaaattggcgatagaattgcacaaagcatcattgatttttcgaac
gatgcagggaatattgaattggtaaaccgattaaaatcatacggagtacagttagaagta
tcggcagagagtttagaaggtcaaaccgataagctagcaggaaacgtgtttgtagtttca
ggagtttttcatcaaatgagtcgaaatgaactgaaaaaagccatcgaagataatggaggc
aaagtatcgagttccatttctaaaaaaactacctatattgttgctggagacaatatggga
cccagtaaacttaccaaagctgaaaatttagggattccaattatttctgaacaagatttt
ttggagatgattggttga
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