Thioalkalivibrio paradoxus: THITH_09580
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Entry
THITH_09580 CDS
T03590
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03030
DNA replication
tti03410
Base excision repair
tti03420
Nucleotide excision repair
tti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THITH_09580 (ligA)
03410 Base excision repair
THITH_09580 (ligA)
03420 Nucleotide excision repair
THITH_09580 (ligA)
03430 Mismatch repair
THITH_09580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tti03032
]
THITH_09580 (ligA)
03400 DNA repair and recombination proteins [BR:
tti03400
]
THITH_09580 (ligA)
Enzymes [BR:
tti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
THITH_09580 (ligA)
DNA replication proteins [BR:
tti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
THITH_09580 (ligA)
DNA repair and recombination proteins [BR:
tti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
THITH_09580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THITH_09580 (ligA)
MMR (mismatch excision repair)
DNA ligase
THITH_09580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THITH_09580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
PP2C_2
Motif
Other DBs
NCBI-ProteinID:
AHE98474
UniProt:
W0DIM6
LinkDB
All DBs
Position
complement(2033910..2035931)
Genome browser
AA seq
673 aa
AA seq
DB search
MTSLTDAAPARRAAELRERIAHHDWRYYVLDDPEVSDAEYDQLFRELQRLEAEHPELVVP
ESPTQRVSGALTGGFTAVRHRLPMLSLNNAFSEDEIRSFDRRVRERLDADAAVDYMAEPK
LDGLAISLLYRDGRLVRAATRGDGETGEDVTGNVRTVRAIPLALSGSQWPDEFEVRGEVF
MRRRDFERLNQRLQDAGERGFMNPRNAAAGSLRQLDPAVTASRPLSFFAYGPGAVGDYPL
PETQSAVLDWFGSLGIPVCPERARVSGVDAALAYYRELAQRRAALPYDIDGVVFKVDARE
AQQRIGFVARAPRWAIAYKFPAEERTTRLVAVDFQVGRTGALTPVARLEPVLVGGVMVSN
ATLHNMDEVARKDVRIGDRVVVRRAGDVIPEVVGRAGGERDPQTQAIELPAACPECGSRV
EQEDGKAVARCTGGLVCPAQRREALRHFVSRKALDIEGFGERLIEQLVASGTVANPAELF
ALDAGQLEVFERIGPKSAQNLERALQQARETTLARFVYALGIREVGEVTARALAAHFGAL
EPLMQASVEELESIRDVGPVVARHVASFFAEPHNCEVIAALRAAGVHWSESEPADTGVRP
LEGHTYVLTGSLEEMTREQASERLQALGAKVTGNVSRQTTAVIAGASPGSKRARAEALGV
PVLDEAALRELIG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtccctcacggacgccgcgcccgcccgccgggccgcggaattgcgtgaacggatc
gcgcatcatgattggcgctattacgtgctggacgacccggaggtcagcgacgccgagtac
gaccagctgttccgggagctccagcggctcgaggccgaacatccggaactggtggtgccg
gagtcgccgacccagcgggtcagcggagcgctcaccggcgggtttacagcggtgcggcat
cgcctgccgatgctgtcgctgaacaacgcgttctccgaagacgaaatccggtcgttcgac
cggcgcgtccgcgagcgcctcgacgcggatgccgcggtcgattacatggccgagcccaag
ctcgacgggctcgcgatcagcctgctctatcgggacggtcgcctggtgcgggcggccacg
cgcggcgatggcgagaccggcgaggacgtgaccgggaacgtgcgcaccgtgcgcgcgatt
ccgctggcgttgtcgggatcgcagtggccggacgagttcgaggtgcgtggcgaggtgttc
atgcgccgccgggatttcgaacgcctgaaccaacgcctgcaggacgccggcgaacgtggc
ttcatgaatccgcgcaatgccgcggccggaagcctgcgccaactcgatccggcggtgacc
gcaagccggccgctgagcttcttcgcctatggtccgggtgcggtgggcgactacccgctg
ccggagacgcaatccgccgtgctcgactggttcggttcgctcgggatcccggtgtgcccc
gagcgggcccgggtctcgggggtcgacgccgcgctcgcgtactaccgggagctggcgcag
cgccgcgcggcactgccctacgacatcgacggcgtggtgttcaaggtcgatgcgcgggag
gcgcagcagcgcatcgggttcgtggcccgcgcaccgcgctgggcgattgcgtacaagttc
ccggccgaggagcgcactacccggctggtcgcggtggatttccaggtcgggcgcacgggg
gccctgaccccggtggcgcggctggagccggtgctggtcggcggggtgatggtcagcaat
gccacgctgcacaacatggacgaggttgcacgcaaggacgttcgcatcggcgaccgcgtg
gtggtccgccgggccggcgacgtgatcccggaggtggtcgggcgcgcgggcggcgagcgc
gacccgcagacgcaggcgatcgaactgcccgctgcctgccccgagtgcggctctcgggtg
gagcaggaagacggcaaggcggtggcgcgctgcaccggcggtctggtctgtccggcgcag
cggcgcgaggcgcttcgccacttcgtctcgcgcaaggcgctggacatcgagggcttcggg
gaacggctgatcgagcagctggttgcgtcgggtacggtggccaacccggccgagctgttc
gcgctcgatgccgggcaactcgaggtcttcgagcgtatcgggccgaaatcggcgcagaat
ctcgagcgggcgctgcaacaggcccgggaaacgaccctggcccggttcgtctacgcgctc
gggatccgcgaggtcggcgaggtgactgcgcgtgcgctggccgcgcatttcggcgcactg
gaaccgctgatgcaggcctcggtggaggaattggaatcgatccgcgatgtcggtccggtc
gtcgcgcggcatgtcgcgagctttttcgcggagccccacaactgcgaggtgatcgccgcc
ctgcgcgctgccggcgtgcactggtccgagtccgagccggcggatacgggcgtacggccg
ctcgaggggcatacctacgtgttgaccggaagcctcgaggagatgacgcgcgagcaggcg
agcgagcgcctgcaggcgttgggcgcgaaggtcaccggcaacgtctcacggcagacgacc
gcggtgatcgccggcgccagtccgggatccaagcgggcgcgcgccgaggccctgggcgtt
ccggtgctggacgaggccgcgcttcgagagttgatcggctga
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