Thermus thermophilus HB8: TTHA1097
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Entry
TTHA1097 CDS
T00220
Symbol
TTHA1097
Name
(GenBank) DNA ligase [NAD+]
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ttj
Thermus thermophilus HB8
Pathway
ttj03030
DNA replication
ttj03410
Base excision repair
ttj03420
Nucleotide excision repair
ttj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TTHA1097 (TTHA1097)
03410 Base excision repair
TTHA1097 (TTHA1097)
03420 Nucleotide excision repair
TTHA1097 (TTHA1097)
03430 Mismatch repair
TTHA1097 (TTHA1097)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttj03032
]
TTHA1097 (TTHA1097)
03400 DNA repair and recombination proteins [BR:
ttj03400
]
TTHA1097 (TTHA1097)
Enzymes [BR:
ttj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TTHA1097 (TTHA1097)
DNA replication proteins [BR:
ttj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TTHA1097 (TTHA1097)
DNA repair and recombination proteins [BR:
ttj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TTHA1097 (TTHA1097)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TTHA1097 (TTHA1097)
MMR (mismatch excision repair)
DNA ligase
TTHA1097 (TTHA1097)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TTHA1097 (TTHA1097)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAD70920
UniProt:
P26996
Structure
PDB
PDBj
LinkDB
All DBs
Position
1:complement(1042879..1044909)
Genome browser
AA seq
676 aa
AA seq
DB search
MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELKSPDSP
TLQVGARPLEATFRPVRHPTRMYSLDNAFNLDELKAFEERIERALGRKGPFAYTVEHKVD
GLSVNLYYEEGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKGVPERLEVRGEVYMPIE
AFLRLNEELEERGERIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEEVEREGV
ATQFALLHWLKEKGFPVEHGYARAVGAEGVEAVYQDWLKKRRALPFEADGVVVKLDELAL
WRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFLEGSEVSRV
TLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGEERPIRWPETCPECGHRLL
KEGKVHRCPNPLCPAKRFEAIRHFASRKAMDIQGLGEKLIERLLEKGLVKDVADLYRLRK
EDLVGLERMGEKSAQNLLRQIEESKKRGLERLLYALGLPGVGEVLARNLAARFGNMDRLL
EASLEELLEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVEMEAKEKGGEALKGLTFV
ITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEEL
YRLLEARTGKKAEELV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaccctggaagaggcgaggaagcgggtaaacgagttacgggacctcatccgctaccac
aactaccgctactacgtcctggcggacccggagatctccgacgccgagtacgaccggctt
cttagggagctcaaggagcttgaggagcgcttccccgagctcaaaagcccggactccccc
acccttcaggtgggggcgaggcctttggaggccaccttccgccccgtccgccaccccacc
cgcatgtactccttggacaacgcctttaaccttgacgagctcaaggcctttgaggagcgg
atagaacgggccctggggcggaagggccccttcgcctacaccgtggagcacaaggtggac
gggctttccgtgaacctctactacgaggagggggtcctggtctacggggccacccggggg
gacggggaggtgggggaggaggtgacccagaacctcctcaccatccccaccatcccgagg
aggctcaagggggtgccggagcgcctcgaggtccggggggaggtctacatgcccatagag
gccttcctccggctcaacgaggagctggaggagcggggggagaggatcttcaaaaaccct
aggaatgcggcggcgggttccttaaggcaaaaagacccccgcatcaccgccaagcggggc
ctcagggccaccttctacgccttagggcttgggctggaggaggtggagagggaaggggtg
gcgacccagtttgccctcctccactggctcaaggaaaaaggcttccccgtggagcacggc
tacgcccgggccgtgggggcggaaggggtggaggcggtctaccaggactggctcaagaag
cggcgggcgcttccctttgaggcggacggggtggtggtgaagctggacgagcttgccctt
tggcgggagctcggctacaccgcccgcgccccccggttcgccatcgcctacaagttcccc
gccgaggagaaggagacccggcttttggacgtggtcttccaggtggggcgcaccgggcgg
gtgacccccgtggggatcctcgagcccgtcttcctagagggcagcgaggtctcccgggtc
accctgcacaacgagagctacatagaggagttggacatccgcatcggggactgggttttg
gtgcacaaggcgggcggggtcatccccgaggtcctccgggtcctcaaggagaggcgcacg
ggggaggaaaggcccattcgctggcccgagacctgccccgagtgcggccaccgcctcctc
aaggaggggaaggtccaccgctgccccaaccccttgtgccccgccaagcgctttgaggcc
atccgccacttcgcctcccgcaaggccatggacatccagggcctgggggaaaagctcatt
gagaggcttttggaaaaggggctggtcaaggacgtggccgacctctaccgcttgagaaag
gaagacctggtgggcctggagcgcatgggggagaagagcgcccaaaacctcctccgccag
atagaggagagcaagaaaagaggcctggagcgcctcctctacgccttggggcttcccggg
gtgggggaggtcttggcccggaacctggcggcccgcttcgggaacatggaccgcctcctc
gaggccagcctggaggagctcctggaggtggaggaggtgggggagctcacggcgagggcc
atcctggagaccttgaaggaccccgccttccgcgacctggtacggaggctcaaggaggcg
ggggtggagatggaggccaaggagaagggcggggaggcccttaaagggctcaccttcgtg
atcaccggggagctttcccgcccccgggaagaggtgaaggccctcctaaggcgcctcggg
gccaaggtgacggactccgtgagccggaagacgagctacctcgtggtgggggagaacccg
gggagcaagctggagaaggccagggccctcggggtccccaccctcacggaggaggagctc
taccggctcctggaggcgcggacggggaagaaggcggaggagctcgtctaa
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integrated database retrieval system
