Thermus thermophilus JL-18: TtJL18_0962
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Entry
TtJL18_0962 CDS
T02009
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ttl
Thermus thermophilus JL-18
Pathway
ttl03030
DNA replication
ttl03410
Base excision repair
ttl03420
Nucleotide excision repair
ttl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TtJL18_0962
03410 Base excision repair
TtJL18_0962
03420 Nucleotide excision repair
TtJL18_0962
03430 Mismatch repair
TtJL18_0962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttl03032
]
TtJL18_0962
03400 DNA repair and recombination proteins [BR:
ttl03400
]
TtJL18_0962
Enzymes [BR:
ttl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TtJL18_0962
DNA replication proteins [BR:
ttl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TtJL18_0962
DNA repair and recombination proteins [BR:
ttl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TtJL18_0962
NER (nucleotide excision repair)
GGR (global genome repair) factors
TtJL18_0962
MMR (mismatch excision repair)
DNA ligase
TtJL18_0962
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TtJL18_0962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AFH38862
UniProt:
H9ZRA2
LinkDB
All DBs
Position
874999..877029
Genome browser
AA seq
676 aa
AA seq
DB search
MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELKSPDSP
TEQVGARPLESTFRPVRHPTRMYSLDNAFNFDELKAFEERIGRALGRKGPFTYTVEHKVD
GLSVNLYYEDGVLVYGATRGDGEVGEEVTQNLLTIPTIPRRLKGVPERLEVRGEVYMPIE
AFLRLNEELEERGEKIFKNPRNAAAGSLRQKDPRITAKRGLRATFYALGLGLEEVEREGV
ATQFALLHWLKEKGFPVEHGYARAVGAEGVEAAYQDWLKKRRVLPFEADGVVVKLDELAL
WRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGRTGRVTPVGILEPVFIEGSEVSRV
TLHNESYIEELDIRIGDWVLVHKAGGVIPEILRVLKERRTGEERPVRWPETCPECGHRLL
KEGKVHRCPNPLCPAKRFEAIRHFASRKAMDIQGLGEKLIERLLEKGLVKDVADLYRLRK
EDLVGLERMGEKSAQNLLRQIEESKKRGLERLLYALGLPGVGEVLARNLAARFGNMDRLL
EASLEELLEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVEMEAKEKGGEALKGLTFV
ITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEEL
YRLLEARTGKKAEELV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaccctggaagaggcgaggaagcgggtaaacgagctacgggacctcatccgctaccac
aactaccgctactacgtcctggcggacccggagatttccgacgccgagtacgaccggctt
cttagggagctcaaggagcttgaggagcgcttccccgagctcaaaagcccggactccccc
acggagcaggtgggggcaaggcctttggagtccaccttccgccccgtccgccaccccacc
cgcatgtactccttggacaacgcctttaactttgacgagctcaaggcctttgaggaacgg
atagggcgggccctgggccggaagggccccttcacctacaccgtggagcacaaggtggac
ggcctctccgtcaacctttactacgaggacggggtcctggtctacggggccacccggggg
gacggggaggtgggggaggaggtgacccagaacctcctcaccattcccaccatcccgaga
aggctcaagggggtgccggagcgcctcgaggtccggggcgaagtctacatgcccatagag
gccttcctccggctcaacgaggagctggaggagcggggggagaagatcttcaaaaacccc
aggaacgcggcggcgggttccttaaggcaaaaagacccccgcatcaccgccaagcggggc
ctcagggccaccttctacgccttagggcttgggctggaagaggtggagagggaaggggtg
gcgacccagtttgccctcctccactggctcaaggaaaaaggcttccccgtggagcacggc
tacgcgcgggccgtgggggcggaaggggtggaggcggcctaccaggactggctcaagaag
cggcgggtccttccctttgaggcggacggggtggtggtgaagctggacgagcttgccctt
tggcgggagctcggctacaccgcccgcgccccccggttcgccatcgcctacaagttcccc
gccgaggagaaggagacccggcttttggacgtggtcttccaagtggggcgcaccgggcgg
gtgacccccgtggggatcctcgagcccgtcttcatagagggcagcgaggtttcccgggtc
accctgcacaacgagagctacatagaggagctggacatccgcatcggggactgggttttg
gtgcacaaggcgggcggggtcatccccgagatcctccgggtcctcaaggagaggcgcacg
ggagaggagcggcccgttcgctggcctgagacctgccccgagtgcggccaccgcctcctc
aaggaggggaaagtccaccggtgccccaaccccttgtgccccgccaagcgatttgaggcc
atccgccacttcgcctcccgcaaggccatggacatccagggcctgggggaaaagctcatt
gagaggcttttggaaaaggggctggtcaaggacgtggccgacctctaccgcttgagaaag
gaagacctggtgggcctagagcgcatgggggagaagagcgcccaaaacctcctccgccag
atagaagagagcaaaaaaagaggcctggagcgcctcctctacgccttggggcttcccggg
gtgggggaggtcttggcccggaacctggcggcccgcttcgggaacatggaccgcctcctc
gaggccagcctggaggagctcttggaggtggaggaggtgggggagctcacggcgagggcc
atcctggagaccctgaaggaccccgccttccgcgacctggtgcgaaggctcaaggaggcg
ggggtggagatggaggccaaggaaaagggcggggaggcccttaaagggctcaccttcgtg
atcaccggggagctttcccgcccccgggaagaggtgaaggccctcctccggcgcctcggg
gccaaggtgacggactccgtgagccggaagacgagctacctcgtggtgggggagaacccg
gggagcaagctggagaaggccagggccctcggggtccccaccctcacggaggaggagctc
taccgcctcctggaggcgcggacggggaagaaggcggaggagctcgtctaa
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