Thermochromatium tepidum: E6P07_00200
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Entry
E6P07_00200 CDS
T06573
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ttp
Thermochromatium tepidum
Pathway
ttp03030
DNA replication
ttp03410
Base excision repair
ttp03420
Nucleotide excision repair
ttp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E6P07_00200 (ligA)
03410 Base excision repair
E6P07_00200 (ligA)
03420 Nucleotide excision repair
E6P07_00200 (ligA)
03430 Mismatch repair
E6P07_00200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttp03032
]
E6P07_00200 (ligA)
03400 DNA repair and recombination proteins [BR:
ttp03400
]
E6P07_00200 (ligA)
Enzymes [BR:
ttp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E6P07_00200 (ligA)
DNA replication proteins [BR:
ttp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E6P07_00200 (ligA)
DNA repair and recombination proteins [BR:
ttp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E6P07_00200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E6P07_00200 (ligA)
MMR (mismatch excision repair)
DNA ligase
E6P07_00200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E6P07_00200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Transposase_20
UPF0758_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QGU31550
UniProt:
A0A6I6EBL9
LinkDB
All DBs
Position
43948..46029
Genome browser
AA seq
693 aa
AA seq
DB search
MTSSDIARRIEALRAEIRHHNHRYYVLDDPEIPDAEYDRLFAELQRLEAEHPELITPDSP
TQRVGAEVRPDLSEVRHSVPMISLDNAMNDAQLVEFHRRITAALPELDPVPYTAEPKFDG
LAISLRYESGVLVLAATRGDGTRGEDVTHNARVIPSVPLRLLGGDWPEVLEVRGEVYMPR
AGFDRLNADLEARGERPFANPRNAAAGSLRQLDPRIAAQRPLRFCAYGWGEISGETGTSQ
FEMLQRLAGWGLPISPELRRVAGLDGCRAYFEALAQRRAVLDYDIDGVVFKLDHLPAQAA
LGATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVRIGGVTVSKATLH
NLDEVRRKDVRIGDTVSIRRAGDVIPEIVRVLVERRPDGARPVELPTRCPVCGSDVIQPE
GEAVARCSGGLWCPAQRKEAIRHFASRRALDIEGLGEKLIEQLVDLDWVREPADLYGLTA
DRLASLDRMGERSAANLIAALERSKETTLARFVFALGIRGVGETTAQQLAEHFGRIEALM
AARVEELVTIKGIGPVVAAHIVGFMAQPHNRAAIAHLLAAGIHWPEVERSASAPAEPSAL
PLSDKTFVITGTLSRPRHAVAAQLRALGAKVTESLSKKTDYLLAGTAPGSKLAQAERLGV
RVIDEAGLDTLIARHQLPLEGEAISRDTTGGMR
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcctcggatatcgcccggcgcatcgaggcgctgcgcgccgagatccgccatcac
aatcatcgctattatgtactcgacgacccggagatcccggacgccgagtacgatcggctg
tttgccgagctccagcgcttggaggccgaacaccccgagctgatcacccccgactcgccc
acccagcgggtcggcgccgaggtgcgtccagatctcagcgaggttcggcattccgtcccc
atgatctcgctcgacaatgcgatgaacgacgcgcagctggtcgagttccatcgtcgtatc
accgccgccctgcctgagctcgatcctgtgccctataccgccgagcccaagttcgacggc
ctggcgatcagcctgcgttatgagtccggcgtcctggtgttggccgccacccgtggcgat
ggcacgcgcggcgaggacgtgacccacaatgcgcgcgttatcccgagcgtgccgctgcgg
cttttggggggggactggcccgaggtgttggaggtgcgcggcgaggtctatatgccgcgc
gccggattcgatcggctcaacgccgacctggaggcgcgcggcgagcgtcccttcgccaat
ccgcgcaacgccgccgccggcagcctgcgtcagctcgatccgcgcatcgccgcccagcgc
ccgttgcgcttttgcgcctatggctggggcgagatttcgggcgagacgggcacgagtcag
ttcgagatgctccagcgtctggcgggttgggggttaccgatctcgcccgagctgcggcgg
gtggcgggactcgacggctgtcgcgcctatttcgaggcattggcgcagcgacgcgcggtg
ctcgactacgacatcgacggggtggtgttcaaactcgaccacctgccggcacaggcagcg
ctcggggccacggcacaccatccgcgctgggccatcgcgcgcaagtttccggcccaggag
gccctgaccgaggtcgaggcggtcgagttccaggtcgggcgcaccggggcggtgaccccg
gtagcgcgactgcgtccggtaaggatcggcggcgtgaccgtctccaaggccacgctgcac
aatctcgacgaggttcggcgcaaggacgtgcgcatcggggataccgtctccatccgccgc
gcgggcgatgtgatccctgagatcgtccgtgtgctggtcgagcggcgtccggacggggcg
cgtccagtcgaactaccgacccggtgtccggtctgcgggtcggacgtgatccagcccgag
ggcgaggcggtcgcacgctgtagcggtgggctttggtgtccggcccagcgcaaggaggca
atccggcattttgcctcgcgccgggcactggatatcgaagggctgggcgagaagctcatc
gagcaactggtcgatctggactgggtgcgcgagccggcggatctctatggtctgactgcc
gaccgcttggcctcgttggaccgcatgggcgagaggtcggcagccaatctgatcgcggcg
ctggagcgcagcaaagagacgacgctggcgcgcttcgtctttgcgctcgggatccgcggg
gtcggtgagaccacggcgcaacaactggcagagcatttcggcaggatcgaggcgctgatg
gcggcgcgcgtcgaggagctggtcacgatcaagggcatcggcccggtggtggcggcccac
atcgtcggttttatggcccagccgcacaatcgcgcggcgatcgcccatctgcttgccgct
gggatccactggcccgaggtcgagcgctcggcttcagcccccgccgaaccgagcgcctta
cccctgagcgacaagaccttcgtcatcaccggtacgctcagccgcccgcgtcacgcggtg
gcggcccagttgcgcgccctgggcgccaaggtgacagagagcctctccaagaagaccgat
tatctcctggcaggtacggcgcccgggtcgaagctcgcccaggccgagaggctgggggtg
agggtgatcgatgaggccgggctggacaccttgatcgcgcggcaccagctcccacttgag
ggggaagccatttccagagacaccacagggggtatgcgatga
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