Tepidimonas taiwanensis: LCC91_05035
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Entry
LCC91_05035 CDS
T07546
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw03030
DNA replication
ttw03410
Base excision repair
ttw03420
Nucleotide excision repair
ttw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCC91_05035 (ligA)
03410 Base excision repair
LCC91_05035 (ligA)
03420 Nucleotide excision repair
LCC91_05035 (ligA)
03430 Mismatch repair
LCC91_05035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttw03032
]
LCC91_05035 (ligA)
03400 DNA repair and recombination proteins [BR:
ttw03400
]
LCC91_05035 (ligA)
Enzymes [BR:
ttw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCC91_05035 (ligA)
DNA replication proteins [BR:
ttw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCC91_05035 (ligA)
DNA repair and recombination proteins [BR:
ttw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCC91_05035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCC91_05035 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCC91_05035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCC91_05035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UBQ06449
LinkDB
All DBs
Position
1088756..1090915
Genome browser
AA seq
719 aa
AA seq
DB search
MSRPTSPHAPAAQADLFAPSDTAPDAASPEARERQRLEALRAALHHHAWRYYVLDDPEIP
DAEYDRMFAELQAIEARHPEWVTPDSPTQRVGGRVLDGFVPVRHAVPMLSIRTETDTEPA
AALAFDARMRRELGLGPDDPPIDYVAEPKFDGLAIGLLYEHGVLVRAATRGDGETGEDVT
QNIRTIGQIPLRLQGDGSRIPRLEVRGEVYMRRDDFEALNARQRERGEKTFVNPRNAAAG
AVRQLDPAVAASRPLSFFAYGLGEVTPPEAGGPNFDTHWQVLQALRAWGFPVSDLARRCA
GGEALAAYHRAIGAQRDRLPFDIDGVVYKVDRLDWQRRLGFVTREPRWAIAHKYPAQEQL
TRVLAIDVQVGRTGKLTPVAKLEPVFVGGVTVTNATLHNADEVRRKDVRVGDTVIVRRAG
DVIPEVVAVAPPLPEPRGEPFEMPATCPACGSAVVREEGEVDHRCTGGLYCPAQRKQAIL
HFAQRRAMDIEGLGEKLVDQLVDTGLVRTVADLYRLGLTALVGLERMAEKSAANVLAAIE
RSKSTTLARFLFALGIRHVGESTARDLARHFGRLDAIMDASVEALQAVPDVGPVVARSVR
TFFEQPHNREVVEQLRACGVHWPEHDGATDDAAALPLAGKTFVLTGTLPTLSREEAKARI
EAAGGKVSGSVSRKTDWVVAGDAPGSKLDKARELGVAVIDEAGLLALLAGDPAPSPVSL
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccccacgtcaccgcacgcccccgccgcgcaggcagatctgttcgcaccgtcc
gacactgcaccggatgcggcctcccccgaggcgcgcgagcggcagcggctggaggcgctg
cgcgcggcactgcaccaccacgcgtggcgctactacgtgctcgacgacccggaaatcccg
gatgccgagtacgaccggatgttcgcagagctgcaggcgatcgaggcgcgtcaccccgag
tgggtgacgccggactcgccgacgcagcgcgtgggcggccgcgtgctggacgggttcgtc
cccgtgcggcacgcggtgccgatgctgtcgatccgcacggaaaccgacaccgagccggca
gccgccctggcgttcgacgcgcgcatgcggcgtgaattgggcctcgggccggacgatccg
ccgatcgactatgtcgccgagcccaaattcgacgggctggcgatcggcctgctgtacgag
cacggcgtgctcgtgcgcgccgccacccgcggcgacggcgagacgggcgaggacgtgacg
caaaatatccgcacgatcggccagattccgctgcggctgcagggcgacggcagccgcatc
ccgcggctggaggtgcgcggcgaggtgtacatgcgccgcgacgatttcgaggcgctcaac
gcccgccagcgcgagcgcggcgaaaaaaccttcgtcaacccgcgcaacgccgcggccggg
gccgtgcgccagctcgacccggcggtggccgcgtcgcggccgctgagcttttttgcctac
gggctgggcgaggtcacgccgccggaggcgggcgggccgaatttcgacacccactggcag
gtgctgcaagcgctgcgcgcatggggctttccggtgtcagacctcgcgcgccgctgcgcg
gggggcgaggcgctggcggcataccaccgcgccatcggcgcgcagcgcgaccggctgccg
ttcgacatcgacggggtcgtctacaaggtggaccggctggactggcagcggcggctgggt
ttcgtcacgcgcgagccgcgctgggccattgcccacaagtacccggcgcaggagcagctc
acgcgcgtgctggcgatcgacgtgcaggtcggccgcaccggcaagctcaccccggtggcc
aagctggagccggtgttcgtcggcggggtgacggtgaccaacgccacgctgcacaacgcc
gacgaggtgcggcgcaaggatgtgcgcgttggcgacacggtcatcgtgcgccgcgccggc
gacgtgatcccggaggtggtggcggtcgcgccgccgctgcccgagccgcgcggtgagccg
ttcgagatgcccgccacctgccccgcctgtggcagcgccgtcgtgcgcgaggagggcgag
gtcgaccaccgttgcaccgggggcctgtactgcccggcccagcgcaagcaggctatcctg
cactttgcccaacgacgcgcgatggacatcgaagggctgggcgaaaagctggtcgatcag
ctggtggacacgggcctggtgcgcaccgtggccgacctgtaccggctggggttgacggcg
ctcgtcggactcgagcgcatggccgagaagtccgcggccaatgtgctggcggcgatcgag
cgctccaaatcgacgacgctggcgcgctttctgttcgcgctgggcatccgccacgtgggc
gaaagcaccgcgcgcgacctggcgcggcatttcgggcggctggacgcgatcatggacgcc
agcgtcgaggcgctgcaggcggtgccggacgtggggccggtggtggcgcgcagcgtgcgc
acctttttcgagcagccgcacaaccgcgaggtggtggagcagctgcgcgcctgtggcgtg
cactggcccgagcacgacggtgccaccgacgacgcggccgcgctgccgctggccggcaag
accttcgtgttgaccgggacgctgccgacgctgtcgcgcgaggaggccaaggcccgcatc
gaggccgccggcggcaaggtcagcggctcggtcagccgcaagacggactgggtcgtcgcc
ggcgacgcgccgggcagcaagctcgacaaggcgcgcgaactgggcgtggccgtgatcgac
gaggcggggctgctcgcgctgctagccggggatccggcgccgtcgccggtcagtctttga
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