Thunnus thynnus (Atlantic bluefin tuna): 137168981
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Entry
137168981 CDS
T11154
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04115
p53 signaling pathway
tty04145
Phagosome
tty04148
Efferocytosis
tty04350
TGF-beta signaling pathway
tty04510
Focal adhesion
tty04512
ECM-receptor interaction
tty04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
137168981 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137168981 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
137168981 (thbs1b)
04148 Efferocytosis
137168981 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
137168981 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
137168981 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137168981 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tty04131
]
137168981 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137168981 (thbs1b)
Membrane trafficking [BR:
tty04131
]
Endocytosis
Phagocytosis
Opsonins
137168981 (thbs1b)
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137168981 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
EGF
TSP1_CCN
cEGF
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
137168981
NCBI-ProteinID:
XP_067428000
LinkDB
All DBs
Position
18:complement(22804373..22817066)
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AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWTCESARVAESRDDNSVYDLFDLIQVSKKNHGVSLVKGDDPYSPAYKI
LNPSLIPPVPERAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKKDGSGPVFEIVS
NGKANTLDIVFATENKQQVVSIEDVDLATGHWKNITLFVQEDRALLYAGCEEVNTAELDA
PIQSILTQETPASAQLRVGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSMTTDTM
ILENLNGSSAIRTEYTGHKSKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTD
ENKLIKTHIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
ECYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCEGEGRQT
EKCQKSPCPINGNWGPWSPWDTCSLTCGGGVQIRKRVCNDPAPKYGGKECVGETKDTQMC
NKKACPIDGCLSNPCFAGAKCISSPDGSWKCGKCPVGYTGNGIKCKDVDECKEVPDACFE
FNGAHRCVNTDPGYNCLPCPSRYSGPQPFGRGVEQAAAKKQVCTPRNPCLDGSHNCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDSIPDDRDNCPFVYNPRQSDYDRDDVGDRCDNCPYDS
NPDQTDTDNNQEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDEKDNCRLAHNPDQLDADGDGRGDACKDDFDQDNVPDIYDVCPENFDISQTDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacagggatatttttactattgatgctttggacctgcgagagtgcgagagtc
gcagagagccgagacgacaatagcgtgtatgacttgtttgatctcatccaagtctccaag
aagaaccacggcgtctccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaatccgagcctgatccccccggtccccgagagggccttcagggacctgatcgattcc
atccacgccgagaggggattccttctcctgctcaacttcaagcagttcaaacggacccgg
ggaagtctcctgaccgtggagaagaaggacggctccggtcccgtgtttgagatcgtctcc
aacggaaaggcgaacactttggacatagttttcgccaccgagaacaagcagcaagtggtt
tccatcgaagatgtggatctggctacgggccactggaagaatatcacgttgttcgtgcag
gaggaccgggcgctgctgtacgcgggatgcgaggaggtgaacaccgcagagctggatgcg
cccatccagagcatcctgacgcaggagacccctgccagcgcgcagctcagggttgggaag
ggagccgtgaaggacaggtttatgggggtcctgcaaaacgtacggtttgtgtttggaaca
acactagatgccatcctccgcaacaaaggatgccaaagctcaatgacgactgacaccatg
atcctggagaatctcaatggctcttcagccatcagaacagagtacactggacataagtct
aaagatctgcagatggtctgtggcttctcctgtgaggacctggtcagcatgtttaaggag
ctcaagggtctcggtgtggtggtcaaggagctgtccaatgaactccgccagcttacggat
gaaaacaagctgattaagacccacatcggtattcacagtggcgtctgcattcacaatggt
attgtgcacaagaacagagacgagtggaccgttgatgactgcaccgagtgcacttgtcag
aactctgctactgtgtgccgcaagatctcctgccctctgatcccctgcgctaatgctact
gttcctgatggagagtgctgcccgcgctgtggaacaccgagcgactatgcagaggacggc
tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag
cgtgggcgctcttgcgaccgtatcaataacaactgtgagggtacctctgtgcagacccgc
gaatgctacctccaggagtgtgacaagcgcttcaagcaggatggcaactggagccactgg
tcaccctggtcatcatgctctgtcacctgtggtgctggtgtcatcacccgtatccgcctc
tgcaactcccccaccccccagcttggaggcaaggactgtgagggagagggcaggcaaacc
gagaagtgtcagaagtctccatgccccatcaatggcaactggggaccctggtcaccgtgg
gatacctgcagtcttacatgtggaggtggtgtccagattcgtaaacgtgtgtgcaatgac
cctgcaccaaaatatggtggcaaagagtgtgttggtgaaaccaaagatacccagatgtgc
aacaagaaagcttgtcccattgatgggtgtctatccaacccctgctttgctggggccaag
tgcatcagttcccctgatggttcctggaagtgcggaaagtgcccagttggctacaccggc
aatggtatcaagtgtaaagatgttgatgagtgcaaggaggttccagacgcttgctttgag
tttaatggtgcgcaccgctgtgtgaacacagatcctggctacaactgcctgccatgtcct
tctcgctactctggaccccagccgtttggcagaggtgtggagcaggctgctgctaagaaa
caggtgtgcacaccccgtaatccctgtcttgacggaagccacaactgcaacaaaaacgcc
cgctgtaactacctcggacactttgctgatcccatgtatcgttgcgagtgcaaacctggc
tacgctggcaatggtcatatctgtggagaggacacagatctggatggatggcccaatgct
gacttggtttgcgtggagaatgccacctaccactgcaaaaaggacaactgccccaacctc
cctaactctggacaggaagattatgataaggacggcattggagatgcttgtgacaatgat
gatgacaatgacagcattcctgatgacagggacaactgtccattcgtctacaaccccagg
cagtccgattatgaccgtgatgacgttggtgaccgctgtgacaactgcccctacgacagt
aacccagaccagacagacacagacaacaatcaagagggagatgcctgcgctgtggacatc
gatggagatggcattctaaatgagaaggacaactgtccctatgtgtacaatgtcgaccag
agagacacagatctggatggagtgggagacatgtgtgataactgccccctggaacataat
cctgatcaggtggattcagatgatgaccgtgtgggagacaagtgtgacagcaaccaggac
attgatgaggatggacaccagaacaacttggacaactgcccgtatatccccaatgccaac
caggctgaccatgacaaggacggcaagggagacgcctgcgaccacgatgatgacaatgat
ggcatccccgatgaaaaggacaactgcagactggcccacaaccctgaccagctggacgct
gatggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaatgtgcctgac
atctacgacgtgtgtccagagaactttgatattagtcagacagacttccgcaagttccag
atggttcctctggaccccaaaggcacctcccagattgatcctaactgggtcgtccgtcat
cagggcaaagaactggttcagactgtcaactgtgaccctggcattgctgttggttaccat
gagttcaatgcagtggacttcagtgggactttcttcatcaacaccgagagggatgatgat
tacgccggcttcgtgtttggttaccagtctagttccaggttctatgtggtgatgtggaag
cagatcacacagacctactggtcaaataaacccaccaaagcccagggctactctggcctt
tccatcaaagtggtcaactccaccactggcccaggagagcacctcaggaatgccctctgg
cacacaggaaatacaccaggacaggtccgcactctctggcatgaccctaagaatgttgga
tggaaagatttcaccgcctacagatggcatctgatccacagaccaagaacaggacatatt
agagttgtgatgtatgaaggcaagaagatcatggcagattctggtagcatttatgacaag
acatatgcaggcggcaggctaggtctgtttgtcttctcacaggagatggtatacttctca
gacctcaagtatgaatgcagagatgcataa
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