Thunnus thynnus (Atlantic bluefin tuna): 137199176
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Entry
137199176 CDS
T11154
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
tty Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04115
p53 signaling pathway
tty04145
Phagosome
tty04148
Efferocytosis
tty04350
TGF-beta signaling pathway
tty04510
Focal adhesion
tty04512
ECM-receptor interaction
tty04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tty00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
137199176
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137199176
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
137199176
04148 Efferocytosis
137199176
09143 Cell growth and death
04115 p53 signaling pathway
137199176
09144 Cellular community - eukaryotes
04510 Focal adhesion
137199176
09142 Cell motility
04820 Cytoskeleton in muscle cells
137199176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tty04131
]
137199176
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tty00536
]
137199176
Membrane trafficking [BR:
tty04131
]
Endocytosis
Phagocytosis
Opsonins
137199176
Glycosaminoglycan binding proteins [BR:
tty00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137199176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
EGF_3
TSP1_ADAMTS
TSP1_CFP_C
EGF_CA
cEGF
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
137199176
NCBI-ProteinID:
XP_067469347
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All DBs
Position
16:complement(18879741..18888912)
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AA seq
1172 aa
AA seq
DB search
MMLCGIFLLLMLWSCEGARLAESRDDNSIYDLFDLARVSKRHNGVGLVKGADPYSPAYKV
LNPDLIPPVPDSSFRDLIDSIQAERGFLLLVNLKQAKKTRGSILTIEKNDKSGPVFEIVS
NGKANTLDVVYSTMNQQQVVSIEDANLATGHWRNITLFVQDDRAQLFVGCEEINVSEMDV
PIYKVLSQEVADIARLRIGKGAVKDRFMGVLQNVHFVFGTTLDAILRNKGCHSGAALTDV
MTLDNPVNGSSPAIRTDYTGHKAKDLHSVCGISCEDIASMFKELKGLGVVVKQLSNELRK
VSEDSNLLKNQMNIHSGICFHNGIVHMDKDEWTVDGCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDYAEDGWSPWSEWTPCSVTCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCEGEG
RQTEVCQKSPCPINGGWGPWSPWDTCTVTCGGGIQNRKRLCSDPVPKYGGKDCVGDAKMS
QVCNKQDCPVDGCLSNPCFPGAKCTSSPDGSFRCGRCPLGYTGNGITCKDIDECKEVPDA
CHTHNGKHRCENTEPGYNCLPCPARFSGPQPFGKGVEQATAKKQVCTPRNPCQDGSHNCN
KNANCIYLGIYSDSMFRCECKPGYAGNGHICGEDSDLDGWPNKNLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPMVYNPAQYDADRDDVGDHCDNCV
FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQIDSDSDLIGDKCDNNQDIDEDGHQNNMDNCPYIPNSNQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIDDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGLYVFSQEMVYFSDLKYACKDT
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgtggcatctttctgctgttgatgctttggagttgtgaaggcgcaagattg
gcagagagtcgggatgacaacagtatttatgacttatttgacctcgctcgggtaagcaag
aggcacaatggagtgggtttggtcaaaggcgcagatccctacagccctgcatacaaggtc
ctgaacccagacctgatcccccccgtccccgacagctccttcagggacctcatcgactcc
atccaggcagagaggggtttcctcctcctggtcaacctgaagcaggccaagaaaaccagg
ggcagcattttaaccatcgagaagaatgacaaatccggacccgttttcgagatcgtttcc
aatggcaaggcgaacactttggacgtggtctactccaccatgaaccagcagcaggtcgtg
tccatcgaggatgcgaatttggccactggacactggaggaacatcacgctgttcgttcag
gatgaccgtgcgcaactctttgtgggctgtgaggagatcaatgtatcagagatggatgtg
ccaatctataaagtgctgtcccaggaggtggcagacatcgccagactcaggattggaaag
ggagcagtgaaagacagattcatgggagtgcttcagaatgtacactttgtctttgggacc
actctggatgccatactgagaaataagggatgccacagtggagctgccttaactgatgtc
atgaccctggacaacccagtcaatggctccagccctgccattaggactgattacactggc
cacaaagccaaagatctgcactctgtctgcggcatctcttgtgaggacatcgcaagcatg
ttcaaggagctcaagggactcggcgtggttgttaaacagctgtcaaacgagctccgcaaa
gtgtctgaggacagcaatctgctgaaaaatcaaatgaacatccatagtggaatttgcttc
cacaatggcatcgtgcacatggacaaagatgaatggaccgtcgatggctgcactgagtgc
acctgccagaactctgctacagtgtgtcgtaaaatctcctgcccactgatcccctgtgct
aacgccaccgtgcccgacggagagtgctgccctcgctgtggaacaccaagtgactatgca
gaggatggttggtccccctggtctgaatggactccttgttcagtgacttgtggtcgtggc
atccagcagcgtggacgctcctgtgaccgcatcaacagcaactgtgagggcacctctgtc
cagacccgtgactgctacccccaggaatgcgacaaacgcttcaaacaggacggtggctgg
agccattggtctccctggtcttcatgctctgtgacctgcggtgagggtgtcatcacccga
attcgcctctgcaactcccctacaccccagatgggtggcagggactgcgagggagaagga
cgtcaaactgaagtctgccaaaagtctccttgtcctatcaatggaggttggggaccttgg
tcaccatgggacacctgcactgttacctgtggtggaggaatccagaaccgcaaacgtctc
tgttctgatcctgtccccaaatatggaggaaaggattgtgttggtgatgccaaaatgtct
caagtgtgcaacaaacaagactgccctgttgatggttgtctctccaacccatgcttccct
ggcgcaaagtgcaccagctcccctgatggctctttcagatgtggcaggtgtccacttggc
tacaccgggaatggcatcacctgcaaagacattgatgagtgtaaagaggtccctgatgct
tgccatacacacaacggaaagcatcgctgtgagaacactgagccaggttacaactgcttg
ccctgccctgcacgtttctctggtcctcagccctttggaaaaggagtggagcaggcaact
gccaaaaaacaggtttgcacaccccgtaacccttgccaggatggtagccacaactgcaat
aaaaatgcaaactgcatctacttgggcatctactccgactctatgttccgatgcgagtgc
aagccagggtatgctgggaatggccatatttgcggagaggacagtgacctggatggatgg
cccaacaagaacctgctgtgtgtggagaatgctacctaccactgcaagaaggataactgc
cccaaccttcccaactctggccaagaagatcatgacaaagatggcctgggtgatgaatgt
gaccatgatgatgacaatgatgggatccccgatgatagggacaactgccccatggtgtac
aaccctgctcagtatgatgcagacagggatgatgttggcgaccactgtgacaactgtgtg
ttcgaggctaacactgaccaaaccgatactgacaacaatggagagggtgatgcctgtgct
gttgacattgatggtgatggcattctgaacgagaacgacaattgcccatatgtgtacaac
gtggatcagagagatactgacagagatggagtgggagaccattgtgacaactgccctctg
gagcataaccctgatcagattgactctgactcagatctcataggagacaagtgtgacaac
aaccaggacattgacgaggacggtcaccagaacaatatggacaactgcccttacatccct
aactccaaccaggctgaccacgacaaggatggcaagggtgatgcctgcgaccacgatgat
gacaatgatggcattcctgatgacaaagacaactgccgactggcctttaaccctgatcaa
ttggactctgatggtgatggtcgtggtgatgtgtgcaaagatgactttgaccaagacaat
attctggacattgatgacgtgtgcccagagaactttgccatcagtgaaacagacttccgc
agattccagatggttcctctggaccctaagggcacctcccagattgaccccaactgggtg
gtccggcatcagggcaaggagttggtgcagactgtcaactgtgaccctggcattgctgtt
ggttttgacgagttcagtgcagtggatttcagtggaacattcttcatcaacacggacaga
gatgatgactatgctggcttcgtgtttggctaccagtccagctctcgcttctacacagtc
atgtggaaacagatcacgcaaacctactggtcccacacacccacaagagctcaaggctac
tctggactgtccatcaaagtggtcaactccaccactgggcctggtgagcacctgaggaat
gccctgtggcacaccggagataccccaggacaggtgcgtactctgtggcacgaccctaag
aacattggctggaaagatttcaccgcctacagatggcacctgacccacagacccaagact
ggacttattagagtggttatgtatgaaggcaagagaatcatggccgattctggaaacatc
tatgacaagacgtatgctggtgggcgactaggcttgtatgtcttctctcaggagatggtt
tacttctcagacctcaaatacgcatgcaaagatacataa
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