Tenuifilum thalassicum: FHG85_06110
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Entry
FHG85_06110 CDS
T06728
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ttz
Tenuifilum thalassicum
Pathway
ttz03030
DNA replication
ttz03410
Base excision repair
ttz03420
Nucleotide excision repair
ttz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ttz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FHG85_06110 (ligA)
03410 Base excision repair
FHG85_06110 (ligA)
03420 Nucleotide excision repair
FHG85_06110 (ligA)
03430 Mismatch repair
FHG85_06110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ttz03032
]
FHG85_06110 (ligA)
03400 DNA repair and recombination proteins [BR:
ttz03400
]
FHG85_06110 (ligA)
Enzymes [BR:
ttz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FHG85_06110 (ligA)
DNA replication proteins [BR:
ttz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FHG85_06110 (ligA)
DNA repair and recombination proteins [BR:
ttz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FHG85_06110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FHG85_06110 (ligA)
MMR (mismatch excision repair)
DNA ligase
FHG85_06110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FHG85_06110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_lig_T4_1
5_3_exonuc
HHH
Auto_anti-p27
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
QKG79851
UniProt:
A0A7D3XV26
LinkDB
All DBs
Position
1464151..1466160
Genome browser
AA seq
669 aa
AA seq
DB search
MDKQKALERIKYLRSELNRHNYLYYVKAEPEISDYDYDLLLRELADLERQFPEFDDPNSP
TKRVGSDLSHDFTQVRHRYPMLSLANVYSFDELGEFDNRVRKALTEGFEYVCELKFDGVA
IGLTYHDGKLVQAVTRGDGTVGDDVTTNVRTIRTIPLELNGNDFPKEFEIRGEIFMPRKV
FDELNAEREEIGETPFANPRNAAAGTLKLLNSAEVAKRKLDCFLYFILGENLPFDNHYQN
MLKAKEWGFKVSEYMTLCKDLQEVKQFIDNWEDKRKKLPVDTDGVVIKVNSYKHQALLGL
TAKTPRWAVAFKYKPERVSTELLSVDFQVGRTGAITPVANLKPVKLAGTTVKRASLHNAD
QIEQLGIRVGDWVFVEKGGEIIPKIVGVDKSKATLFTKSIVFPESCPECGVALVRPEGEA
RHFCPNQNGCPPQIKGRIEHFISRKALNIDGLGEETVALLFDKKLISDAADLYALTKEQL
LGLERFAEKSADNAIKSIEKSKSVPFPRVLYGIGIRYVGETTAKKLAQHFRSIDAIANAT
VEQFIEVEDVGERIAASIVDFFKDERNIKLIEKLKSAGVQLQLSDEETRKISDKLKGLTI
VISGTFSRVSRDELKELIVKHGGKNVSSLSSSTSLLVAGEKMGPAKFEKANKLGIKIITE
EEFFDMIEE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggataagcagaaagcccttgaaagaattaaatatctcagaagtgagcttaatcgtcac
aactatttatactacgttaaggctgaacctgagataagcgattacgattacgatttgctt
ctgcgtgagcttgcagacttggagcggcagtttcccgagttcgacgaccctaactcgcct
accaaaagggtgggtagcgatttatcgcatgattttacacaagtccgtcatcgttacccg
atgctttctttggctaatgtttactcttttgatgagcttggtgaatttgataaccgagtt
aggaaggcattgaccgagggttttgaatacgtttgtgagcttaagtttgatggggtagcc
attgggcttacctaccatgacggtaaacttgttcaagcggttacacgcggcgatggcact
gttggcgatgatgtaactaccaatgtccgaactataagaaccataccgcttgaacttaat
ggcaacgatttcccaaaggagtttgaaatcaggggagaaattttcatgcctcgtaaagtg
tttgacgagctgaatgctgaacgcgaagagattggcgaaactccttttgctaatcctcga
aatgctgctgctggcactctcaaacttctaaactcagccgaagttgcaaaacgaaaatta
gactgtttcttatactttattcttggtgaaaacctgccctttgataaccattatcaaaat
atgctaaaggcaaaagagtggggatttaaggtttcggagtacatgactctttgcaaagat
ttacaggaggtaaagcaatttattgacaattgggaagataagcgcaagaaattacctgtt
gataccgatggtgtggttattaaggtaaatagctataagcatcaagcattgcttgggtta
actgccaaaacacctcgctgggctgtagcattcaagtataagcccgaaagggtttcaaca
gagctgttaagtgtagattttcaggttggacgtacaggagccataacacctgttgcaaat
ctaaaacctgtaaaacttgccggaacaaccgtaaaacgtgcatcgctgcacaatgccgat
cagattgaacagcttggaattagagtaggcgattgggtttttgttgaaaagggtggggag
attattcccaaaattgtgggtgttgataagtcaaaagcaacattatttacaaaatcaatc
gtttttccagagtcgtgtccagaatgcggagtggcattagttcgtcccgagggtgaggcc
cgtcacttttgccctaaccaaaatggttgtccgcctcaaataaaaggtagaattgagcac
tttattagccgtaaagcattaaatattgatgggttgggtgaggagaccgtagctctcctt
ttcgataaaaaactcatttccgatgctgccgatttgtatgcgttaactaaagagcagctt
ttaggtcttgagcgatttgccgaaaaatcggccgataatgccattaaaagcattgaaaaa
tcaaaatcagttccctttccgcgagttctttatggcattggtattcggtatgtgggtgaa
actacagccaaaaaacttgcgcagcatttccgaagtatcgatgccattgccaatgctact
gttgagcagtttattgaggtagaagatgttggagaaagaatagcagctagcattgttgat
ttctttaaagatgaacggaatataaagctaatagagaaacttaaatcggcaggggttcaa
ctccagctaagcgacgaggaaaccagaaaaatatccgataagttaaaaggcctaaccata
gtgatttcaggaactttttctcgagtgtcgcgcgatgagttaaaggaactaattgtaaag
catggaggtaaaaatgtcagctcgctatcttcatctacctctttacttgtagctggtgag
aaaatgggacccgcaaaatttgaaaaagctaacaaacttggaataaagattatcaccgaa
gaggaattctttgatatgatagaagagtag
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