Turicibacter sp. KK003: VXM77_10620
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Entry
VXM77_10620 CDS
T10570
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tuk Turicibacter sp. KK003
Pathway
tuk03030
DNA replication
tuk03410
Base excision repair
tuk03420
Nucleotide excision repair
tuk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tuk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VXM77_10620 (ligA)
03410 Base excision repair
VXM77_10620 (ligA)
03420 Nucleotide excision repair
VXM77_10620 (ligA)
03430 Mismatch repair
VXM77_10620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tuk03032
]
VXM77_10620 (ligA)
03400 DNA repair and recombination proteins [BR:
tuk03400
]
VXM77_10620 (ligA)
Enzymes [BR:
tuk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VXM77_10620 (ligA)
DNA replication proteins [BR:
tuk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VXM77_10620 (ligA)
DNA repair and recombination proteins [BR:
tuk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VXM77_10620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VXM77_10620 (ligA)
MMR (mismatch excision repair)
DNA ligase
VXM77_10620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VXM77_10620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_Ribbon_TF
Auto_anti-p27
zf-FPG_IleRS
DUF4908
Motif
Other DBs
NCBI-ProteinID:
WWR13113
LinkDB
All DBs
Position
complement(2188473..2190461)
Genome browser
AA seq
662 aa
AA seq
DB search
MLKQRVEELTKLLNQYNTEYYVFDNPSVSDREYDRLLQELIEIEQKNPELKTPTSPTVRV
GGAVLEGFDKVLHTNPMLSLGNAFNEGDLREFDSRIRKVTPNINYVCELKIDGLAVTLHY
ENGQFVRGATRGDGTTGEDISENLKTIRAIPLTIPYSDLLEVRGEAYMSKETLEKLNKRR
AQNGEELFANPRNAAAGSLRQLDSKVTSKRELSMFCYAVPSAKQLGCKTHAESLDKIKEM
GFNVNPNYEVCQSIDEVLAYIEKWSTMRTELPYEIDGIVIKVNQLDDQEILGNTVKSPRW
AIAYKFPAEEVETVLKDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNEDYVKERDI
RVNDRVIIRKAGEIIPEVVKPLIEERNGDEVPFEMIHECPRCGSVLVREENEADYYCLNI
DCPARIVESLCHFVSRNAMNIDGLGIKVVQQLYEQQLIKNVADIYKLERNQLLPLERMGE
KKVSNLLAAIENSKQNSLERLLFGLGIRHVGSKTAKVLATHFEEIDKLIGATFEDFKGIP
EIGEVISKSVIHYFADESNKMLIEELKTLGLNTLYTGNKLVANTQESAFYGKSVVLTGTL
TTLSRKEASMKLEELGARVSGSVSAKTDFLVAGEKSGSKLKKAQELGITVIDEETMLKMI
GE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcagcgtgtggaagagttaacaaagctattaaatcaatataacacagagtat
tatgtcttcgataatccaagtgttagcgatcgcgagtatgaccggcttttacaggaatta
attgaaatagaacaaaaaaaccctgaacttaagactccaacatccccgacagtgcgtgtt
ggaggcgccgttttagaaggttttgataaagtgttacatacgaatccaatgttgtcgtta
ggaaatgcttttaatgaaggtgatttaagagaatttgattcacggataaggaaagtgacg
cctaatattaattatgtttgtgaattaaagattgatgggttagcagtgacacttcattat
gagaatggccagtttgttcgcggtgcgacacgtggggacgggacaactggagaggatatt
agtgaaaacttaaaaacgattcgggcgattccgttaacgataccttatagtgatttattg
gaggttcgtggagaagcgtatatgtcaaaagagacgctagaaaagttaaataagcgccgt
gcgcagaatggagaagagttattcgccaatccccgtaatgcggctgcagggtcactacga
caattagattctaaagtgacgtctaaacgtgaattaagtatgttttgttatgctgtgcct
agtgctaaacaattaggatgtaaaacgcatgctgaaagtttagataaaattaaggaaatg
ggatttaatgttaatccaaattatgaagtatgccagtctattgatgaagtattagcgtat
attgaaaagtggtctacgatgagaacggaattaccttatgagattgatggaattgtgatt
aaagtgaatcaattggatgatcaggagattttaggtaatacggttaaaagtcctagatgg
gccattgcatataagtttcctgccgaggaggttgagactgtcttaaaagatattattttt
acagttggtcgaacggggatggtgacgcctaatgccgtgttagagcctgttcgtgtagcg
ggaacacgggtaagtcgtgcgacgttacataatgaggattatgtaaaggaacgtgacatt
cgcgttaatgatcgtgtaattattcggaaggcaggggaaataattcctgaagtagtgaag
cctttaatcgaagaaagaaacggtgatgaggtaccttttgagatgattcatgaatgtcca
cgctgtggaagtgttctagttcgcgaggaaaatgaggcggattactattgtttaaacatt
gactgcccggcacgtattgtggaaagtttatgccactttgtatcacgtaatgcgatgaat
attgatggattagggattaaggtagtacagcaattatatgagcaacagttaataaaaaat
gtggccgacatttataaactagagcgaaatcagttattaccgcttgaacgtatgggcgag
aaaaaggtctcgaatttattagcggctattgaaaatagtaaacagaatagtttagaacgg
ttattgttcggattaggaattcgtcatgtggggagtaaaacggctaaagttttggcaact
cactttgaagagatagataaattaataggggccactttcgaagattttaaaggaatacct
gagattggtgaagttatttcaaagagcgttattcattactttgcggatgaatcaaataaa
atgttgatcgaagaattaaagacattaggattaaatacgctttatacaggaaataaatta
gtggctaatacgcaggaaagtgccttctacggaaaaagcgtggtgttgactggaacattg
acaaccttatcgcgtaaggaagcgagtatgaagttggaggaattaggggcaagagtttca
ggaagtgtaagtgctaaaacagatttcttagttgcaggtgagaaaagtggttcaaagctt
aaaaaggcacaggagcttggaatcacggtgattgatgaagaaacgatgttaaaaatgatt
ggtgaatag
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