Tachysurus vachellii: 132839582
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Entry
132839582 CDS
T09596
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132839582 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132839582 (lig4)
Enzymes [BR:
tvc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132839582 (lig4)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132839582 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
132839582
NCBI-ProteinID:
XP_060716617
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All DBs
Position
24:complement(7481501..7485186)
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AA seq
918 aa
AA seq
DB search
MEGLSKGQRTEETSKSDAASKTSVAAQVPFLDLCTVLENIQKAKARPDKAKCLKDFIDSW
RRFHAALHKDNPSTTDSFYPAIRLIVPSYERERMAYGIKENMLAKLYIEVLGLPKSGPEA
NKLLNYRAPTTSKSESGDFALTAYFVLKKRCTSKGNLSIKEVNDFLDSVAMNNTGKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQVFHSDAAELYNVTTDLDRVCR
QLHDPSVSLNEVSISLFSAFKPMLAAIANIRQVEKQMGNHVFYIETKLDGERIQLHKDGD
VYKYYSRNSFDYTQQFGASPLEGSLTPYIHNVFESHVINCILDGEMMAYNPTTETFMQKG
SKFDVKRLVDDSDLQACFCVFDVLLVNDQKFGNEPLKKRYDTLQTVFTPIKGRIQLVQYT
EAKTRQEVINALNEAIDDREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGEKPTVFHTLCRIGSGYTMKELYELGLKLAKHW
KVYRKSSPPAGILCGTEKPEVYIEPRNSVIIQVKAAEIVTSDMYKTSCTLRFPRIEKIRE
DKEWYDCMTLDELSQFRDKASGKLASRHLYLQEDELQKKKRKLASKPKKTIDIVGHFKSQ
DLSTVTKETDMFEDVEFCVMSGSSMHSKADLERAVARCGGIVVQNPGKDTYCVIAGIENV
RVKNLIGSNQHDIVWESWLLECLDRKQVLPWQPQHMIHMSPSTKETFAKEYDCYGDSYYV
DTDEKQLRDVFSRMGPVEVDAVSIASIEQNYGLDDLPTSMFRPYHAYFDGCAVIGNPETL
IMNTCLDFRALEFRFHGGIVAEKLEEGISHVVVEGEDRLLELKTHRRLFTKKFKIIQETW
VSDSIKAGHILNDSDYLV
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggagggtttatcgaaaggccagagaacagaggaaacgtccaaaagtgatgctgcgtct
aaaacatctgtagctgcacaagtgccatttcttgacctgtgcactgttcttgagaatatc
cagaaagccaaagctcgaccagacaaagccaaatgcttaaaagatttcatagattcatgg
agaaggtttcatgcagctctacacaaagataatcccagcactacagattcattttaccca
gccattcgtcttattgttccttcttatgaaagggagagaatggcttatggtatcaaagaa
aacatgttagccaagctctacattgaggtcttgggtcttccaaaatctgggcctgaggcc
aataaacttctcaattacagagcccctactacatccaaaagcgaatctggagactttgcc
cttacagcttactttgtcctcaaaaagagatgcacgagtaagggtaatctaagtatcaaa
gaggtcaatgacttcttggattcagtagctatgaataatacgggcaaacagaaagacctt
gtgaagaaaagccttctacatttgattactcaaagctcagcactggaacagaagtggctt
attcgtatgatcctaaaagacatgaaacttgggattagcaaggaaaccgttctccaggtt
tttcactcagatgctgcagagctctacaatgtcactacagacttggacagggtgtgcaga
cagctacatgacccctctgtatccttgaatgaggtatccatcagtctgttttctgcattc
aaacccatgcttgcggctattgccaacatccgccaagtggagaaacagatggggaaccat
gttttctatattgagaccaagctggacggtgaacggattcaacttcataaggatggggat
gtatacaagtactacagtcgtaactcatttgactacacacaacagtttggggcttcacca
ctagagggttccctaacaccttatatccacaatgtctttgaatcccatgttatcaattgc
atcttggatggagagatgatggcttataaccccaccactgagaccttcatgcaaaaaggc
agcaaatttgatgtcaagcgcttggtggatgactctgatttgcaggcatgcttttgtgtg
tttgacgtcctgcttgttaatgaccagaagtttggaaatgagcctctcaagaagcgttat
gacactctccagacagtcttcacacccatcaaaggccggatccagctggtacagtacact
gaagccaaaaccagacaggaagtgataaatgccctcaatgaagctattgacgaccgtgaa
gaaggcatcatggtcaaagaccccatgtccatttataagccagataaacgtggcgaaggc
tggctgaagatcaaacctgaatatgttgatggcttgatggatgaattggatttgctaata
gtgggaggctactggggaaaaggcagacggagcggaatgttgtcccactttctctgtgct
gttgctgaaactccaagtcctggagagaagccaacagtgttccatacactctgtcgaatt
ggatcaggctacaccatgaaggagctctatgaacttggcttgaaattagccaaacactgg
aaagtttatcgcaagagtagccctccggctggcattttgtgcggaacagagaagccagag
gtttacatcgagccaagaaactctgtgatcattcaagtcaaagcggcagagattgttacc
agtgacatgtacaaaactagctgcactctgcgcttccccaggatcgagaagatccgagag
gacaaagaatggtatgactgcatgaccttggatgagctaagtcagtttcgtgataaagcc
tctggcaagctggcatccaggcacctttacctccaagaagacgagctgcaaaagaagaaa
cgcaaactcgcatccaagcccaaaaagaccattgacatagttggccacttcaaatcccaa
gacctgtccacagtcactaaagagaccgacatgtttgaagatgtggaattctgtgtgatg
agtggaagcagcatgcattccaaagccgatcttgagagggctgtggcccgttgtggaggc
atcgtagtgcagaaccctggaaaggacacgtactgcgtgattgcaggcattgaaaatgtg
cgggtgaagaaccttatcggttcaaaccaacatgacatagtatgggaatcctggctcctg
gaatgtctggacaggaaacaggtgctaccatggcaaccacaacacatgatccacatgtcg
ccttcaacaaaggaaacctttgcaaaagagtatgattgctatggtgacagttactacgtt
gacaccgatgagaagcagctgagggatgtctttagcaggatggggccggttgaggtggat
gcagtatccatagcttcaatagagcagaactacggcttggatgacctgcccactagcatg
ttcagaccttaccatgcctactttgatggatgtgctgtaatcggaaatccggaaactctt
attatgaacacgtgtctggactttcgtgctctggagtttcgctttcacgggggcatcgta
gcagaaaaactagaagaaggcatctcacatgtagttgtggagggagaagatagattgttg
gagctaaagacacacagacgcctctttactaagaagtttaagattattcaggaaacatgg
gtgtccgattctattaaagcaggacacatacttaatgacagcgattaccttgtataa
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