Tachysurus vachellii: 132848460
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Entry
132848460 CDS
T09596
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tvc03036
]
132848460 (smchd1)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132848460 (smchd1)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
132848460 (smchd1)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
132848460 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
132848460
NCBI-ProteinID:
XP_060730161
LinkDB
All DBs
Position
7:10231274..10263241
Genome browser
AA seq
1985 aa
AA seq
DB search
MAESGVPAAKASHSSRFVYVFDCRPQCKGITKKVVDVGGKNYTQFLSAVRKDFFISGNER
FVITTTDRRELVSDVYDELSDGKTLYLLQSVDQELAVATEETIKYVPHFHTIVQSGQYEY
YASEGQKALPYAFAELIDNALSATSRNSGIRSIDIRLFFDESQGGPAVVVMDNGRGMTSK
ELNNWAVYRLSKFNRDNSTFRSDESGYVRPSAVPRSLNSDISYFGVGGKQAVFYIGQCVR
IISKPVGSPDVHEFVMSKEDFEQKEKNNKEIYSGIIRNRKPGDGSHLKVDKERFLQTLVL
EEKSKESFTTIVITAVHPEHVAYLKDDFVSWTRELAHIYHYYVHGVQGNVMGNRATAETA
PNIDIQICLIDRYPRLPKLLNLKEIDTDMQTLFINSSVAEFEFKATKEGDAKVEGLIRYH
PFLYDRETYPEDPYAPKPAPERDEDCFVLHAGGRGKRPIFECFWNGRLIPYSSVDEFSWC
ARTSKVGSVPLECYNRISGVLFTNDRFQVSTNKLTFMDLELQLRDKETIFTKVLNGQEQR
ANINREFTNWLSMCHEKYDKQVRFFGFQCITTRPDMQPKRRQSPWAQYKAIEWDGKTFKT
GQQVKTMKTQPIVYGTIEHFLLYGDHEGDVYATGGYVQIILEPKELYNGVKIIPITKIDR
QATHDDIKESIANDLNKLPDKLKVTWPEGNPWPENAIQPAGTPMGPIRVEILNKLGESIS
RLPLPSVNFKKLHIELEVVWHSGNKDTVTNYLVCGRAKWDYWFKKMENFNKLGSYTLHLQ
TVLNDGDPPAKEWAGRRLPDYTLNFSIKESSAAAFAVGVFPSPVQVGVPFALPLKFTDVF
SHPTQPPSGIKPQLECSSLKLSYEKTNASETFTIQDLKAMGKANHPEKVHTVKVTIPGLN
PDCQTFQISVRPGPPHQLVVKPTDEVCIENGTAADFKVEVQDVFHNITTHSKLIVRCQLF
GASDLPVYTADCSNTGTGVLLAKPLQLKDVTTESILTAKFSIPNQKAVACVERTIRILPS
SRVFRIEIYRQENDSDDDIVLQNKEHIKWTAGDTLGSLCFRLYDEGGRKVALTQSLAQKI
KVNWAADIKTAELTKGRLPSVCVPTKAHGEQFCQVLFQDQHTVDTSFTIVPRPDEPDHLK
ITLNETTVRMGETLSGNIYVDVVDQYGNKTDALSADSMKAVSVSAKNLDESALNFDWQTS
TAKMVVTGVRFVEGSPGQRELCFKYQNFEGFARIKVTAGPPVKITLLEAPEQPVQVVNGQ
GLNTPFLLQLCDDWGNPVPDQRVVIAMKPLSPQLKVKSSVMSQPVDTEGKASFILETITA
TIGEHQLEFRGSFSKSNIIPGPVVKLCVLPDPNNPVKLSVEYDSKSVLRAGDIFPVFKLS
VLSEDGRPVKNASPSSLSMLLWQGLASGSHPPNGATTFKCSKPKDKEEDDHFYFRDKEIP
SRVGKYMVQFVYAVEKIKSIWSSQIALDIVANKPVKLVPDSPASTPVVSNSSSLADRTLL
QVLCLKIMDQHSNQAGMGINGKVLLTVTTVDGDDAEDVPMFENKAKSLTYNLTNGETLIT
DLALMENSPGADGAVYVLKFCPVFEDTKSLAIIPPFNLPFRFYNDAENQKVMAAMSKKKD
QLSQSIVVYRDVLETNKQLEAELKGQLQDAVGKETQLKLAIKITGIDISNLTDVTSAEGL
VAQMTADLTRLQNLPRRKCTMSDPFRGGQDVLGKIAHLALVQDDDAAKVISWHLLGDMDC
VVTVTTAAAKRIYDDTQGRQQVIPLDTVFWKPNNRSLPHIRNGQSMFTPVGNPVFARHLL
IYPEHAESCNKVFTTVLGDTILVDDLDSANHYRKGVVQSKVQCPTLLTRQGERIRSNGKF
GGLQNKAPPLEKLRGHVFGAPLPQEYHTMFKQKELLQQYIIAVQNAIKVKADYDLHVENL
QSPAMIEKQQELKQQEKELREIEKKLTSTPVRTSPGSVKRSLTNELDESVPAKRIRHKTP
KLLDP
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcgggagttcctgcagcgaaggcatcacacagcagccggtttgtttatgtc
tttgactgtcgcccccagtgcaaagggatcactaaaaaggtggtggatgtcggcgggaag
aactacacacagtttctgtctgctgtgcgcaaggatttttttatctcaggaaatgaacgt
tttgtgatcacaacgaccgatcgcagggagctcgtttcagacgtttacgacgaattatca
gatggaaaaactttatacctgctacaatcagtggatcaggaactggctgttgcaactgaa
gaaacaattaagtatgttccccatttccacaccatcgtgcagagcggccagtatgagtac
tatgccagtgaaggacaaaaggcactaccctatgcctttgctgagcttattgataatgca
ctttctgcaacctcgcgtaattctggaatcaggagcatcgacataagattgttctttgat
gagtctcaaggtggaccggcagtagtagtgatggataacggacgtggaatgacctccaag
gagttaaataactgggcagtttatcgcctttctaaattcaatcgagacaacagcacattt
aggagtgatgaatcaggatatgtgcgtcccagtgcagtccctcgcagtctgaacagtgac
atctcctactttggtgttggaggcaaacaggctgtgttttatataggccagtgtgtacgg
atcataagtaaaccagtcggctctccagacgtccacgagtttgtcatgtctaaagaagac
tttgagcagaaggagaaaaacaacaaagaaatttattctggtatcatccggaacagaaag
ccaggagatggctctcatttgaaagtggataaggagcgtttcctgcaaactctggttctg
gaagagaaaagcaaggagagttttactactatagtcataactgcagtccacccagaacat
gttgcctacctgaaagacgattttgtctcctggaccagagagctggcgcacatctatcat
tactatgttcacggtgtacaaggaaatgtcatgggaaacagagcaactgcagaaactgct
ccaaacattgacatccagatctgtttaattgatcggtaccctcgcttgccaaagctactg
aatttaaaagagatagataccgacatgcagactctttttataaactccagtgtggctgag
tttgagtttaaagccactaaagaaggagacgccaaagtagagggtctgattagatatcat
cccttcctgtacgacagagaaacctatccagaggacccctatgcccctaaaccagctcca
gagcgcgacgaagactgctttgttttacacgctgggggccgagggaaaagacccatcttt
gaatgcttttggaacggacgattaattccctattcctccgttgatgagtttagttggtgt
gcaagaaccagtaaagtcggttcagtaccgttagaatgctataacaggatctcgggcgtt
ctcttcactaatgaccgttttcaggtcagcaccaacaaactcacattcatggatctggaa
ttacagcttcgtgacaaagagaccatatttacaaaagttcttaatggtcaggagcaaaga
gcgaacatcaaccgagagttcacaaactggttgagtatgtgccatgaaaaatatgataaa
caggtcaggttctttggtttccaatgtataacgactcgcccagatatgcaacctaagcgt
cggcagtcaccgtgggctcagtacaaagccatcgagtgggatggtaaaaccttcaaaact
ggacagcaggtgaagacgatgaaaactcagcctatagtttatggcacaatagagcacttt
ttgctctatggggaccatgaaggcgacgtctatgccactggggggtatgtgcaaatcata
ctggaacctaaggagttgtataatggggttaagatcatccccattactaagatcgacaga
caggctacacatgatgacatcaaggaaagcattgcgaatgatctaaacaaacttccggat
aagttgaaagtcacatggccagaggggaatccgtggcctgagaatgctatccagccagct
gggactcccatgggcccaatcagagttgagattttgaataaactaggggagagcatatca
cggctgcctttacccagtgttaatttcaagaaattacatattgagcttgaagtagtctgg
cactctgggaacaaggacactgtaaccaactatctcgtttgtgggcgcgctaagtgggac
tactggtttaaaaaaatggaaaattttaataagttggggtcgtacacgcttcatttgcaa
actgtactgaacgacggtgatcccccagcgaaagagtgggccggaagaagactacctgat
tatacgctcaacttcagcattaaagaaagcagtgcagcagcttttgcggtcggtgttttt
ccttctcccgttcaggtgggagtaccattcgctttgcctctgaaatttacagatgtgttt
agtcatccaactcagccaccttctggtatcaaaccccagctagagtgcagttcactgaaa
ctgagctatgaaaagacgaatgcaagtgaaactttcaccatacaagacctgaaagctatg
ggtaaagccaaccatcctgagaaggtacacaccgtaaaggtaacaatcccaggcctcaac
ccagactgccagacgttccaaattagtgtccgtccaggccctcctcatcagctggtggtg
aagcctacagatgaagtttgcatagagaacggcacagctgcagacttcaaagtagaagtt
caggacgtgttccataatattacaacgcattccaaactcattgtccgctgccagttattc
ggagcctctgatttgccagtgtacacggctgactgcagtaatacagggactggtgtgctg
ctggcaaaaccactacaactgaaggacgtcaccaccgaaagtatcctcactgcaaaattt
tccattcctaatcaaaaggctgtggcttgtgtggagagaacaattcgtattttgccaagc
agccgtgtcttccgtatcgagatctataggcaggagaatgattcggacgatgacatagta
ctccagaataaggagcatattaagtggacggctggcgacaccctcgggagtctgtgcttt
agactgtatgatgaggggggcaggaaggtggctttaacacagagtcttgcccagaaaata
aaggtcaactgggctgcagatattaaaacagcagaattgacaaagggaagactaccgagt
gtgtgtgttcccactaaagcacacggagaacaattttgtcaggtgttatttcaggatcag
cacacggtcgacacgtcttttaccatagtcccacggcctgacgagcccgatcatctgaag
ataactcttaatgagacaactgtccggatgggggaaactctgtctggaaatatttatgtt
gacgtggttgatcagtatggcaataagactgatgctctaagtgctgacagcatgaaggca
gtcagtgtgtctgcaaaaaaccttgatgaatcagccttgaatttcgactggcagaccagt
acagcgaaaatggtggtgactggcgttcgctttgtagaaggttctcctggacaacgggag
ctgtgttttaaataccagaattttgaagggtttgccagaataaaagtcactgcaggacca
cccgtaaaaatcactctgctggaagcaccagagcagcctgtacaggttgtaaacggacaa
ggtctgaacactccattcctgctgcagttgtgtgatgattggggaaatcctgttccagac
cagcgtgttgtaatagcaatgaagcctctgtcaccacagctcaaggtgaaatcttcagtg
atgtcccagcccgtggatacagaaggaaaggccagctttatactggaaaccataacagcg
acaataggagagcatcagctggagttcagaggatccttcagtaaaagcaatattattcct
ggcccagttgtaaagctgtgtgtgttacctgatcccaacaatcccgttaagcttagcgta
gaatacgacagcaaatccgtattaagagcaggagatattttccctgtgttcaaactgagt
gtactctctgaagatggcagacctgtgaagaacgcgagtccatctagtctgtccatgctt
ctgtggcaaggcttggcttcaggatcccaccctccaaatggggcaacaacattcaaatgt
agcaaacccaaggacaaggaagaggatgaccacttttacttcagagataaagagattcct
tcccgagtgggaaagtacatggtgcagtttgtttatgctgtagagaaaatcaagtccatc
tggagcagtcagatcgctctggatattgttgccaataagccagtcaaacttgtcccagac
tctcctgcttcaactcctgtggtctctaacagcagcagtctggctgaccgcactcttcta
caagtactgtgcttgaagataatggatcagcacagtaaccaagctggaatggggattaat
ggaaaagtgctcctgactgtgacaactgttgatggtgatgatgcagaagatgttccaatg
tttgagaacaaggccaagagtctaacatacaatctaactaatggcgaaactcttatcact
gacttggcacttatggagaatagtccaggggctgatggagccgtgtatgtactcaagttc
tgtccggtgtttgaagacactaaatctctggccatcatccctccttttaatttgcccttc
aggttctacaatgatgctgaaaaccagaaggttatggctgcaatgagtaaaaagaaagac
cagctgtctcagtctattgtagtctacagagatgttttggagaccaacaaacaactcgaa
gctgaacttaagggtcaattgcaagatgcagttggtaaagagactcagctaaaactggcg
atcaagataaccggcatagatatttcaaatttaaccgatgtgacatcagctgagggttta
gttgctcaaatgactgcagatttgacgaggctacaaaatctgcctcgtcgaaaatgtacc
atgtctgatccattcagaggcggccaagacgtcctaggaaagatagcacacctggcactt
gttcaggacgacgatgcagcaaaggtcatttcctggcatcttcttggtgacatggactgt
gtggttaccgtgacaacagctgcagcaaaaagaatctacgatgacacacaaggacggcaa
caagtcatacccctagatacagtcttctggaaaccaaacaacaggtcactgccccacatc
aggaacggtcaaagtatgttcactccagtaggaaaccccgtgttcgcaagacacctgctc
atttatcctgagcatgcagaaagctgcaacaaggtcttcaccactgtcctcggagacacc
atattagtggacgatttggattctgctaaccattaccgaaaaggggtcgtccagagcaag
gtgcagtgccctactctgctgacaaggcaaggggagcgtatccgtagcaatgggaagttt
ggtggtttacaaaacaaggctccaccattggagaaactgagaggtcacgtgtttggagcg
ccattgcctcaagaatatcacaccatgttcaagcagaaggagctgctacaacaatacatt
atagcagtacagaatgcaataaaggtcaaggctgattacgacttgcacgtggagaatctg
cagagtcctgctatgatcgagaaacagcaggagctcaaacagcaagagaaggagctcaga
gaaatcgagaaaaaacttaccagcactcctgtgcgtacttctcctggttccgtaaaacga
agccttacaaacgagttagacgagtccgttccggcaaaaaggatccgacataaaacccca
aaactactggatccttaa
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