Tachysurus vachellii: 132855535
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Entry
132855535 CDS
T09596
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
132855535 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tvc03000
]
132855535 (kdm2ab)
04121 Ubiquitin system [BR:
tvc04121
]
132855535 (kdm2ab)
03036 Chromosome and associated proteins [BR:
tvc03036
]
132855535 (kdm2ab)
Enzymes [BR:
tvc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
132855535 (kdm2ab)
Transcription factors [BR:
tvc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
132855535 (kdm2ab)
Ubiquitin system [BR:
tvc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132855535 (kdm2ab)
Chromosome and associated proteins [BR:
tvc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
132855535 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
132855535 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
PHD
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
132855535
NCBI-ProteinID:
XP_060740521
LinkDB
All DBs
Position
13:complement(21096342..21108094)
Genome browser
AA seq
1269 aa
AA seq
DB search
MEETRYSKRLRTGTRRRYQDDGISDDEIEGKTTFDLDEKLESSYFNSDLVKIMDGKDFTF
EYIQREGLRDPIIFTKADGLGIQMPDSDFSVSDVKLFVGSRRMIDVMDVSTQKGMEMSMS
QWRRYYETPASEREKLYNVISLEFSHTKLEHLVKRPASVDLIDWVDNMWPRHLKERQRDS
TNVITDMQYPKVQKYCLMSVKGCFTDFHVDFGGTSVWYHILRGRKVFWLIPPTPQNLELY
ENWVLSGKQGDIFLGDKATACQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHSFN
IPMQLNIYSVEDRTRVPAKFRYPFYYEMCWYVLERYHYCLTNISYLTPEFQRHSLGIGLK
KDDFAKPNNEDGDEKVEVKEGDEEEEEELLSPPARPGVKVHLTPFELEGLRQLLQKLEEL
PTHKKCVPAGIRNAPALLCDIRTLLEEHANDDPKLSYTGKPIVTWPKRPSWYMPLPPPPS
AMYRPRASGSAPTIAPVPRPTKPASSISALRKRRVRCKRCKACRRSECGDCTYCRDMKKF
GGPGRLKKSCILRQCLAPALPLTAVCAICKEGSQEDSEGTQTTQTLMECSECGQITHPEC
ITVPGEGVINNDLPSCWECPKCVQDKNTESSSSNSEEEYKSTVTTSSPTSGPPAKRAYRE
GIGVGALRLGRRGQPSPSPSSLPLTRSRRQPPPSQRILLQHQQSRKRAGALERQHRKRIK
LERNKLFQSTRPSVSVSPKLLRQRSLERGSIIRAGLGRGMSRRRVLPSYQGRAVRLRSEA
SGGALRGRTEREEDGDDHNREEENVKTERRENGLGGKENRPRRYGGRPTEEENREAQQNE
ERYTEAEEDGEQTRSDSAVPGDETRDQRSCVTVTLQPSRGRRDPSTIVPKLEANVSSASH
TQSNNDFQGKSLLRPPLRGDSRRVDKTQSHSNSHATRSQLQTPTLTRSTSKHANVSQSLR
CNSRESHHNTTRERNGKNVRPERGKPPATTSFTSPEQNGTSEPGWGRLVWVSVFRYLTRT
ELCVCMAVCKSWYKWGCDKRLWTHISLSRCQSISPQALSGIIKRQPVTLDLSWAKISKKQ
LTWLINRLPGLKDLVLSGCNWTSVSALSSPSCPLLRSLDLRWADGVKDAQIRELLSPPGS
NNRSQLRNMQCLRLCGLEVTEATLRLIIRHMPQLTRLELSHCPLTDNALNLLTAVGSSTR
NTLTHLNLAGCSRLTDHCLVYLQRLSCLSVLDLRSCKGISRQACEKFISELSVNALYCLS
DDKLIQRIS
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaactcgctacagcaaacgcctgcgaacaggaacacgtaggcgctaccaggac
gatggcatctcggatgatgagatcgaggggaagacgacttttgacttggatgaaaagctt
gaaagcagctactttaattcagatttggtcaaaatcatggatggaaaagactttactttt
gagtacatccagcgggaggggctccgggaccccataatctttactaaagcagacggcctt
ggcattcagatgcccgattcagacttcagtgtgagtgacgtgaaattgtttgttggcagt
cgaaggatgattgacgtgatggatgtaagcactcaaaaggggatggagatgtccatgagt
cagtggaggaggtattatgaaactccagcctcagaaagggagaagctgtacaacgtcatc
agtcttgagttcagtcatacgaaactggagcatctcgtcaagagacctgcctcagttgat
ctgattgactgggtggataacatgtggccacggcacctgaaggagagacaaagagactcc
accaacgtgatcactgacatgcagtatcccaaagtacagaagtactgtctgatgagtgtg
aagggctgctttacagacttccatgtagactttggtggcacatcagtctggtatcacatc
ctgagggggcgcaaggtgttctggctgatcccacccacaccacagaacctggagctctat
gagaactgggtgttgtcgggaaaacagggtgacatcttcctcggggacaaagccacagcc
tgtcagcgcattgaactaaaacagggttacacttttatgatcccctcaggttggatccat
gcagtatacactcctgaagatactctggtgtttggagggaatttcctgcacagttttaac
atcccaatgcagctgaacatctacagtgttgaggaccgcacacgggtcccagctaagttt
cgttacccgttctattacgagatgtgttggtatgtgttggagcgttaccattactgtctg
accaacatttcttatctaacaccagagtttcaaagacactcactgggcatcgggctgaaa
aaagatgactttgctaaaccgaataatgaggatggtgacgaaaaagtggaggttaaagaa
ggtgacgaggaggaggaagaagaactcctctctcctccagcccgacctggagtgaaggtc
cacctgaccccgtttgagttggagggacttcgccagctgctgcagaaactggaggagttg
cccacccacaagaagtgtgtacctgcagggatcagaaatgctccagcacttctctgcgac
attcgtactctgctagaagaacatgccaacgatgatccaaaattgtcttacactggaaaa
cccattgtcacatggcctaaaaggccctcgtggtatatgccactccctccccccccatct
gcaatgtatcgaccacgcgcttcaggatcggcccccacaatagctccggtgccacggcca
actaagcctgcatcttctatctctgctctgaggaaacggcgtgtgcgttgtaagcgctgc
aaggcctgcagacgctccgagtgtggagattgcacctactgcagggacatgaagaagttt
ggcggcccgggtcgactcaaaaagtcctgcattctcagacagtgcctggctccggcgctg
cctctgactgccgtctgtgccatatgcaaagaagggagccaggaagactccgaaggcacc
caaaccactcaaacactcatggagtgctctgaatgtggtcagattacgcacccagaatgt
ataacggtcccaggggaaggtgtgatcaataatgatcttcccagttgctgggagtgtccc
aaatgtgtccaggataagaatacagagtcttccagcagcaactcagaagaagaatataaa
agcactgttacaactagctcgccaacctccggtcctcctgctaagcgggcgtacagagaa
ggcattggggtgggtgctctgcgtttggggcgcaggggtcagccttccccgtctccctct
tccctgcctctgactcgctcccggcgtcaacctccaccctctcagagaatcctgctgcag
caccaacagagtcgcaaaagagccggggcactggagcgacagcaccggaagaggatcaaa
ttagagagaaacaaactcttccagtctacacggccgtctgtctccgtttctccaaagctt
ttgcgccagcggagtttggagagagggagcattatcagggcaggactcggaaggggcatg
tcccgcaggagagtcttgccatcttatcagggaagagcagtacggctaagaagtgaagca
agtggcggggctctgaggggaaggacggagagagaagaggatggagatgaccataacagg
gaggaagagaatgttaagactgaaagaagagagaacgggctgggaggtaaagagaaccgg
ccacggagatatggaggaaggccgacggaagaggagaacagggaagcccaacagaacgaa
gagcggtacaccgaggcagaggaggatggagagcagactcgctctgactccgcggtgcct
ggcgatgagaccagagatcagaggtcatgtgtgaccgtaactttgcagccttcgcgaggc
agacgggaccccagcactattgtccccaagctagaagcgaatgtatcatccgcaagccac
acccaaagcaacaacgacttccagggcaagtccttgctacgcccaccactccgaggtgat
tcgcgccgtgttgataaaactcaatcccactcaaactcgcatgcaaccaggtcacaactc
caaacccccacccttaccaggagcacttccaaacacgctaatgtgagtcagagtttaagg
tgtaactccagagagtcccatcacaacacaacacgagagagaaatgggaagaacgtgcga
ccggaaagagggaagcctcctgccacaacctctttcacatcacctgagcagaatggcaca
agtgaaccaggctggggcaggctggtgtgggtgtctgtcttccgctacctgactcgaact
gagctgtgtgtctgcatggctgtgtgcaagagctggtacaaatgggggtgtgataagcgc
ttgtggacacacatcagtttgagccgctgccagtccatcagcccacaggccctttccggc
atcatcaagcgacagccggttacactggacctgtcctgggccaagatatccaagaaacag
cttacttggctcatcaaccgtttaccagggttaaaagatttggtgctttcagggtgtaac
tggacatccgtctctgctctgagctctcccagttgtcctttactgcgttcattagacctg
cgctgggcagatggtgtcaaagatgcacagatcagagagcttctcagcccaccaggaagt
aataaccgttcacagctgagaaacatgcagtgcttgaggctatgtggtctggaggtgacc
gaggccacactgaggctgatcatcaggcacatgccccagctgacaaggctggagctctca
cactgccctctgaccgacaacgctctcaacctccttactgctgtgggctcatccacacgc
aacacactcacacacctcaacctagcaggttgtagccgtctgacagaccactgtctagtg
tacctgcaacgtttgtcctgtctctctgtgctggacctacgcagctgtaaaggaatctcc
cgacaagcttgcgagaaattcatctccgagctgtccgtcaatgctctctactgcctatcg
gacgataaacttatccagagaatatcctag
DBGET
integrated database retrieval system
