Tachysurus vachellii: 132861148
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Entry
132861148 CDS
T09596
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
tvc
Tachysurus vachellii
Pathway
tvc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132861148 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvc03041
]
132861148 (eftud2)
Spliceosome [BR:
tvc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132861148 (eftud2)
Complex C
U5 SnRNP specific factors
132861148 (eftud2)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
132861148
NCBI-ProteinID:
XP_060748517
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All DBs
Position
18:6180087..6199286
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AA seq
971 aa
AA seq
DB search
METELYDEFGNYIGPDLDSDEDEDVEADDRDAAEADEDEEDEDQVDGEEDGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRTKQFTLTEQELPATVYDMEFLAD
LMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTER
LIKHVVQERLAITICINKIDRLILELKLPPTDAYYKLRHIVDEVNGMLSTYTTDESLVVS
PLLGNVCFASSQYSTCFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
NSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPHRGARAKIEHSYTGGLDSDLAEAMTECDSDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQICTIGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagacagagctgtatgacgaatttgggaactacatcgggccggatctggactccgat
gaggatgaggacgtcgaggcagacgacagagatgcggccgaggcagatgaggatgaagag
gatgaagaccaggttgatggcgaagaggatggcggtggcatggaggtcgttttgcacgag
gataagaagtattatccgaccgcagaggaagtctatgggcccgaggtggagaccatcgtt
caagaagaggacacacaaccgcttaccgagcccattataaagcctgtgaggacgaagcag
ttcactcttacagagcaggagctgccagctacagtttatgacatggagtttctggctgat
ttgatggacagctctgagctgattagaaacgtcacactgtgtggtcatttacaccacggc
aagacatgctttgtggactgcctgattgaacagactcatccagaaatccgtaagagagac
gacgcagatctgcgctacacagatattcttttcaccgaacaagagagaggagtcggcatt
aagagcacaccggtgacgatggtactccctgactcaagagggaaatcctacctgtttaac
atcatggacactccaggtcacgtgaacttctcggacgaggtaacagccggaatcaggctt
tcggacgggatcgtgctgttcatcgacgctgctgagggggtgatgctgaacaccgagcgt
ctgataaaacacgtcgtgcaggagcgcctggccatcaccatctgcattaataaaatagac
cggctgatcttggagctgaaactccctcccactgacgcctactacaaactgcgccatatt
gtcgacgaggtcaacggcatgctcagcacgtatacaactgatgagtctctagtagtgtct
cctcttctgggcaatgtgtgtttcgcttcctcacagtacagcacctgctttactctcggg
tcatttgctaagatctactctgatacctatggtgacataaactacaacgagtttgcaaag
agactctggggagacatctacttcaaccccaagacgaggaagttcactaaaaaagcccct
aacagtaactcgcagcgcagcttcgtcgagttcgtgcttgagccgctctacaagatcctc
tcgcaggtggtcggggatgtggacacatcactgccacgtgtattggatgaattggggatc
cacttgaccaaagaggagctgaaactcaacatccggcctctgctgagactcgtctgcaac
cgcttctttggcgagttcacaggttttgtagacatgtgtgtgcagcacatcccatctcct
cataggggcgccagagccaagatcgagcacagctacaccggaggactggactcagatctg
gctgaggccatgacggagtgtgactctgatggtccgttaatgtgtcacaccactaagatg
tacagcacagacgacggagtgcagttccacgccttcggtcgcgttctgagcgggacgctg
caggcggggcagccggtgaaagttctgggagagaattacactctggaggacgaagaggac
tcacagatctgtaccatcggacgcctctggatctccgtagccaggtatcagattgaggtg
aatcgggtccctgctggcaattgggtgctaattgaaggctgtgaccagcccattgtgaaa
acagccaccatcacagagcctcggggcaatgaagaggctcagatcttcaggccactgaag
ttcaacacagcttcggtcatcaaaattgctgtggagcctgtcaatccgtctgagctgccc
aagatgttggatggactgagaaaggttaataaaagctatccatccctaacaaccaaggtg
gaggagtctggagagcatgttatcctgggtacaggtgaactctacctggactgcgtaatg
cacgacctgagaaagatgtactccgagatcgacatcaaggtagctgaccctgtagtgacc
ttttgcgagaccgtggtggaaacatcttctctcaagtgctttgctgaaacacccaataaa
aagaacaagatcacgatgattgcagagcctctggagaaaggccttgctgaagacatagag
aacgaggtggtgcagattacatggaacagaaagaagttaggagagttcttccagaccaag
tatgactgggatttgctggctgctcgttctatctgggcttttggacccgataccacagga
cccaacatcttagtagatgacacgctgccctctgaggtggacaaagccctccttggctca
gtgaaggacagcatcgttcagggcttccagtggggcactagagaaggtcccctgtgtgat
gaacccattcgcaatgtgaagtttaagatcctggatgcggtcatcgctcaggagccgtta
cacagaggaggtggccaggtcattcctaccgcacgaagagtcgtgtattccgccttcctc
atggctacacccaggctgatggagccctattattttgtggaggttcaggctccggctgat
tgtgtgtctgctgtttacactgtactggcacgcaggagaggtcatgtgacacaggatgca
ccaattcccggttctcccctgtacacaatcaaggctttcattcctgcaatcgactcgttt
gggtttgagaccgatctgcgtactcacacacagggacaagccttcgcactgagtgtgttc
catcactggcagatcgttcctggtgatcccctggacaagagcatcgtgattcggccatta
gagcctcagcctgctcctcatcttgccagagagttcatgatcaaaactcgtagacgcaag
ggtttgagcgaagacgtcagcatcagcaagttcttcgacgatcctatgttgttggagctt
gccaagcaggacgtggtgttgaactaccccatgtga
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