Tachysurus vachellii: 132862031
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Entry
132862031 CDS
T09596
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58 isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc04622
RIG-I-like receptor signaling pathway
tvc04623
Cytosolic DNA-sensing pathway
tvc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
132862031 (rigi)
04623 Cytosolic DNA-sensing pathway
132862031 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
132862031 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tvc04054
]
132862031 (rigi)
Enzymes [BR:
tvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132862031 (rigi)
Pattern recognition receptors [BR:
tvc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132862031 (rigi)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
PhoH
Yippee-Mis18
SNF2-rel_dom
AAA_19
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
132862031
NCBI-ProteinID:
XP_060749832
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All DBs
Position
19:21660276..21675017
Genome browser
AA seq
933 aa
AA seq
DB search
MYELEKESLRLYRGYIAQVLRPSYIRGFLTTYLDEESVDKILSEERSSRMAATQILLDKM
LDLDTVGWFQGFLDILKASEYTGLHMAISKWDFTELEFLCSYRDLLDQVEMSITKNMKPR
ELLPHMSDCLTQRECEEIRAVEEQKGCVAASERLVETLRHCDKSNWFKVFKLALESCNQN
LALQLLEPDENGNCVQNFDENVAGMADVCIEYREDGESDNLMSSNSETEQCVKGAEEGVA
SVCERRTEKKLRKYQKELATAAYNGLNTIICAPTGCGKTIVAVAICEHHLKKYPEKAKVV
FMATKVEVYEQQLKLFKEHFSEDPNIKVEGVCGEMGDVNLPTLVSCNDVLLMTPQILVNA
LQRGDVASLNTFTLLLLDECHNTTGKHPYNNIMSHYIDTKHRRDTNSLPQVVGFTASVGI
KSFKNVLEAENNICQLCANLDARVITTVTENIDELRSFVHTPEKEFFLVNPSTSDPFILI
IKNIMKNIEQLAKGVYPIDTLSQVQRGDYGTQMYEQWIVDVQKRCRLLQFTDHDEERRVC
RALCSYTEHLRKYNDALIINDDARTKDALDFMDSFMKDISNASPDPTERKLIDLYHVQHE
QLLHLAAEGEQNPKLQDLKYILDEEYRNNDQTRTVLFVRTRALAEALKNWIDETDSLKFL
KPGVLIGRGRKSQLAGSGMTLTGQKGVLDSFKSSDQSKILIATSVADEGIDIPQCNLVLM
YEYIGNVVKMVQVRGRGRAKGSRCFLISSRQERIQKEKQNMEREKLVEKAIKLLQDSPDH
MCAKVDRFQKEDVARRAHVNSNEEKTQIDGSYEFLCGKCKKFVCLSDDLRVLQESHHIVL
DKSIFQRCSTKPHRKIRTFDNITKKEKMFCSECQQDWGIIASYMNIQDLPVLKIESFIIK
DLATNEQQYFRKWRDVTFRMRAFDVTEKWEPRT
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggagaaagagtctctgcgcctctacaggggctacatcgcccaggtgtta
cgaccatcttacatccgggggtttttgaccacttacctggatgaagagtctgtagacaag
atcttatcagaggagagatcatcaaggatggcagcaactcagatactactggataagatg
ttggacctggacacggtcggctggttccagggcttcctggacatactgaaagcttcagaa
tatacaggtctccacatggccatcagtaagtgggactttacggagctggagtttctctgt
tcttacagggatctgctggatcaagtcgagatgtccatcaccaaaaacatgaaacccaga
gagctgctgccacacatgagtgactgtctcacacagcgagagtgtgaggagatcagagca
gtggaggagcagaaggggtgtgttgcagcgagtgagcggttagtagaaactctaagacac
tgtgataaatcaaactggtttaaagtgtttaaacttgctctggagagctgcaatcagaac
cttgctctacagctgcttgagcccgatgagaatgggaattgtgttcagaactttgatgag
aatgttgcgggaatggcagatgtgtgtattgagtacagagaggacggtgagagtgacaac
ctgatgagcagcaacagtgagactgagcagtgtgtcaaaggggcagaggagggtgtggcc
agtgtgtgtgagagacgtacagagaagaagttgagaaaatatcaaaaagagctcgctaca
gccgcatacaatgggctcaacaccatcatctgtgctccaacaggttgtggtaaaaccatt
gttgccgtggcgatatgtgaacatcacctgaagaaatatcctgagaaagccaaagtggtt
ttcatggcaaccaaagtggaggtttatgaacaacagctaaaactgttcaaggagcacttc
agcgaggatccaaacataaaagtggaaggtgtctgtggggaaatgggggacgtgaatttg
cccacactggtgtcctgcaatgacgtgctgctgatgactcctcagattctggtgaacgct
ctacagcgtggtgacgtggcctcactaaacaccttcacgctgctgctgctggatgagtgt
cacaacaccaccggcaaacatccgtacaacaacatcatgagccactatattgacaccaaa
caccgtagagacacaaactcactgcctcaggtggtgggcttcactgcgtctgtaggtatc
aagagttttaagaatgttttagaggctgagaacaacatctgccagctgtgtgctaacctg
gatgctcgagtcatcaccacagttacagagaatattgatgagctgagatcatttgtacac
acacctgagaaagaattctttctagttaatcccagcacctcagaccccttcatcctcatc
atcaaaaacatcatgaagaacattgaacagctggctaaaggagtctaccccattgacact
ttgtcccaggtacagagaggtgattatggcactcagatgtatgagcagtggattgtagat
gtacagaaacgctgcagactgcttcagttcactgaccatgatgaggagcgcagagtctgc
agagcattatgcagctacactgaacacctgagaaaatataatgacgctctgatcattaat
gatgatgctcgcacaaaagatgcgttagacttcatggactccttcatgaaggacatcagt
aacgccagcccggaccccacggagcgcaagctcattgacttataccatgttcagcacgaa
caactgctgcatttagctgctgaaggagaacaaaaccccaaactacaggacctcaagtac
atattggatgaagaatacagaaacaatgatcagactcgcactgtgctgttcgtcaggacc
cgcgccctcgctgaagctttgaaaaattggatagatgagaccgattcactaaagtttctg
aagcctggagttctgattggaagaggaagaaaatcacaactggcaggctcgggtatgact
ttgacaggacagaagggtgtgctggactcctttaagagctctgaccagagtaagatcctt
atcgccacctctgttgctgacgagggcatcgatatcccacaatgcaacctggtgctcatg
tacgagtacatcggcaatgttgtcaaaatggtgcaggttcgaggtcgaggcagagctaag
ggcagcaggtgttttctgatctccagtagacaggagcgcattcaaaaagagaaacagaac
atggagagagagaaactggttgagaaagccattaaactcctgcaggactcacctgaccac
atgtgtgccaaggtggaccggttccagaaggaggacgtggcccggagagctcatgtgaac
tcaaatgaagagaaaactcagattgatggaagttatgagtttctgtgtggaaagtgcaag
aagtttgtctgtttaagtgatgacctgcgtgtgctacaggagtctcaccacattgtgctg
gataagtccatattccagcgctgttccactaaacctcacagaaaaatcagaacctttgac
aacatcactaaaaaggagaagatgttttgttctgagtgtcaacaagactggggcatcatc
gcctcctacatgaatatacaggatttgccggtgttgaagattgagagtttcatcatcaaa
gacctcgccacaaatgaacagcaatatttcaggaaatggcgtgatgtcacgttccgtatg
cgagcgttcgacgtgactgagaagtgggagccgaggacgtag
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