Thalassomonas viridans: SG34_017825
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Entry
SG34_017825 CDS
T08831
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03030
DNA replication
tvd03410
Base excision repair
tvd03420
Nucleotide excision repair
tvd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SG34_017825 (ligA)
03410 Base excision repair
SG34_017825 (ligA)
03420 Nucleotide excision repair
SG34_017825 (ligA)
03430 Mismatch repair
SG34_017825 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvd03032
]
SG34_017825 (ligA)
03400 DNA repair and recombination proteins [BR:
tvd03400
]
SG34_017825 (ligA)
Enzymes [BR:
tvd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SG34_017825 (ligA)
DNA replication proteins [BR:
tvd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SG34_017825 (ligA)
DNA repair and recombination proteins [BR:
tvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SG34_017825 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SG34_017825 (ligA)
MMR (mismatch excision repair)
DNA ligase
SG34_017825 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SG34_017825 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WDE03251
UniProt:
A0AAE9YXX0
LinkDB
All DBs
Position
complement(4009533..4011587)
Genome browser
AA seq
684 aa
AA seq
DB search
MTEQALSSRVAELTRQINEYNHQYYVLDQPSVPDAEYDRLMRELIDIENKHPELKALDSP
SQKVGGEVLTAFTQVTHQLPMLSLDNVFSGEEWQAFVKRLHDRLGSNDTLAMCAEPKLDG
LAVSLRYENGVLVQAATRGDGSTGENITENIRTIKSIPLRLNGDKYPGILEVRGEVFMPK
ASFETLNAQAIKKGEKTFVNPRNAAAGSLRQLDSKITAKRNLAFYAYGIGYVGETAENIL
GEAWLEGSHYQRLEQLKTLGLPMCPEVRLLASEDECEAFYQDILNRRDELSYEIDGTVLK
VDDIALQEQLGFVARAPRWATAYKFPAQEELTVLEDVEFQVGRTGAVTPVARLKPVFVGG
VTVSNATLHNQDEIERLEIKVKDTVVIRRAGDVIPQIVSVVKDKRPEDAREIVFPQACPV
CGSEVEKPEGEAVLRCTGGLVCGAQRKEAIKHFASRKALDVDGLGDKLVEQLVDENLIAA
PADLFTLTEIQISTLERMGQKSAQNLLASLEKAKSTTLARFIYALGIREVGETTAANLAN
HYLTLEAVMAAGEESLQQVNDIGAVVAHNILHFFQQENNRQAVTALLEVGINWPEIEVKA
ADEQPLNGQTFVLTGTLSQMGRNEAKAALQSLGAKVSGSVSAKTHYLVAGEKAGSKLTKA
QDLGVEVLTEEQMIALLTEHKAIP
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaagcactttcaagccgtgtcgccgagttaacccggcaaatcaatgagtac
aatcatcaatattatgtgcttgaccagcccagtgtgcctgatgcggaatacgatcgcctg
atgcgcgagttgatcgatattgaaaataaacaccccgagttaaaagcgttagactccccc
agccaaaaggtggggggagaagtcctaaccgcctttacccaggtgacacaccagctgcct
atgttatccctggacaatgttttttccggggaagaatggcaggcttttgtcaaacgcctg
catgaccgcctgggctcaaacgatacgctggccatgtgcgccgagccgaaactcgatggc
ctggcggtgagcctgcgttatgaaaacggcgtcctggtgcaggcggccacccggggagac
ggcagcacaggggaaaatattaccgaaaatatccgtaccataaagtctatcccgctgcgc
cttaatggggacaagtaccctggcattttggaagtacgcggtgaagtcttcatgcccaaa
gccagctttgaaacccttaatgcccaggcgatcaaaaaaggcgaaaaaacctttgtgaat
cccaggaatgcggcggccggtagtctgcgtcaactggactcgaaaattaccgccaagcgc
aacctggcgttttatgcctatggcataggttatgtgggggaaactgctgaaaatatctta
ggagaggcctggcttgagggctcccactaccaacgcctggagcagcttaaaaccctgggt
ttacctatgtgcccggaagtacgcctgctggccagcgaagatgaatgcgaagccttctat
caggatatcttaaaccgccgtgatgagctcagttatgaaatcgacggcacggtattaaaa
gtcgatgacattgcactgcaggagcaactgggctttgttgcccgtgcgccgcgctgggcc
accgcctataagtttcctgcccaggaagaattaactgttttggaagatgtcgaatttcag
gtgggacgcaccggcgccgttaccccggtggcccgtttaaaacctgtgtttgtcggcggg
gttaccgtcagcaatgccactttgcataaccaggatgaaatcgagcgtctggaaattaaa
gttaaagataccgtagtgatccgccgcgccggggatgtgatcccgcaaattgtcagcgtg
gttaaagataaacgtccggaggatgccagggaaatcgtctttccccaggcctgcccggtt
tgcggctctgaggtggaaaagccggaaggggaagccgtgctgcgttgcaccggcggcctg
gtgtgtggcgcccagcgtaaagaggctatcaaacattttgcttcccgcaaggcgctcgat
gttgacggtttaggcgacaagttggtggagcagctggtggatgaaaacctgattgccgcc
ccggcagatctgttcaccttaacggaaatacagatcagcaccttggagcgtatggggcaa
aaatctgcccaaaacctgctggcgtctctggaaaaagccaaatccaccacactggcgcgt
tttatttacgccctggggatccgcgaagtgggggaaaccacggcggccaatctggccaat
cactacctgaccctggaggccgttatggcggcaggcgaagagtctttgcaacaggtaaac
gatatcggcgctgtggttgcccacaacatcctgcactttttccagcaggaaaataaccgt
caggcggtgaccgccttgcttgaggtcggcatcaactggccggagattgaagtgaaggct
gccgacgagcagccgctaaacgggcaaacttttgtgttaaccggtaccttaagccagatg
ggacgtaatgaagccaaggcggctttgcaaagcctgggggccaaggtgtccggcagcgtt
tcggccaaaacccattacctggtggcaggggaaaaagccggctctaaacttactaaggcc
caggatttgggggttgaagtattaacggaagagcaaatgatagccctgcttaccgaacat
aaggccataccatga
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