Trichophyton verrucosum: TRV_03173
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Entry
TRV_03173 CDS
T01615
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tve
Trichophyton verrucosum
Pathway
tve03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TRV_03173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tve03400
]
TRV_03173
Enzymes [BR:
tve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TRV_03173
DNA repair and recombination proteins [BR:
tve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TRV_03173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
BRCT
RTT107_BRCT_5
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
9581401
NCBI-ProteinID:
XP_003022712
UniProt:
D4D7T9
LinkDB
All DBs
AA seq
1012 aa
AA seq
DB search
MEPNPGGAIRETERELDEKPRNHGQTLPFHDLFISLFNPLNDLKKKPAGPPAARRKAGPT
GRNNLSPHELRRNVIERFISRWRQQVGNDFFPAFRLIVPEKDRDRAMYGLKEKAIGKLLV
KVMKIDKNSEDGYNLLNWKLPGQRAATAMTGDFAGRCFEVISKRPLRTEVGDMSIADVNS
RLDDLAVASKEDAQLPILDEFYRRMNPEEMMWLIRIILRQMKVGATERTFFEIWHPDAES
LFNISSSLRRVCWELYLPSIRLEADEARVTLMQCFQPQLAQFQMHSFQKIIERMRLAEDD
PEFWIEEKLDGERMQLHMETNSSIPGGKRFEFWSRKAKEYTYLYGNGFYDDNGSLTRHLK
NAFADGVESIILDGEMITWDPEQDAPVPFGTLKTAALAEQRNPFSASGHRPLFRIFDIVY
LNGKPLTRYTLRDRRRALEASVIPVHRRFEIHPYEVGKSASDIEPLLRKVVAEASEGLVL
KNPNSPYRLNERNDDWMKVKPDYMTEFGESLDCIVVGGYYGSGKRGGNISSYLCGLRVDD
THAEDGTNPMKCYSFCKVGGGFTAADYANIRHHTDGKWHDWNPKKPPTEYIELAGGDAQH
ERPDVWIKPDDSVVVCVKAAAVTPSDQFRLGLTVRFPRFKRLRMDKDWQSALSVQEFIDL
KAGAEQEKKEKDFQVDNSRRKKTKRSKKKELTVVGSGEPNVAYVGSKTHIFDGLSFCGLK
IQALEVNYADIPIVVMTESVKPMKKSKADLEQLIKANGGKIYQTNNAAKDTYCIADRRTV
KVASLQKSGLENVIRPCWISDCISQNEHDTGESSILLPLEPRHMFFTKEDQKEEISNNVD
KYDDSFARDTNIAELTEILHKMDVISDISGEERLDIMSDLTLDGDQGWLFKNLTIFFAPC
GHLSSVPGEPCVDGLSIRQQLARNITTFTGATVTDQQKNNRITHVIVDPSEDRDLETGKT
KNYTTLRSEFATRRTIPHFVTVQWVEECWKEKTLVDEERTYSMLAIALPGLC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggagccgaacccaggtggtgccattagggagacggagagggaacttgacgagaaacca
cgtaaccacggacaaacccttccctttcatgatttgttcatatcactctttaaccctctc
aacgatctcaaaaagaagcctgcaggaccccccgcggctcgaaggaaggcagggcctact
gggcgtaacaacctctcaccacatgagttgcgtcgtaatgtgattgaacgcttcatctcg
cgatggcgacaacaagtcggtaatgactttttcccagcattccggcttattgtccccgag
aaagatcgtgatcgtgccatgtatggattaaaagaaaaggccattggcaaattgctagtc
aaagtcatgaagattgacaaaaattctgaagatggctacaatcttctaaactggaaactt
ccaggccaaagggctgcaaccgcaatgacaggtgattttgccggtcgctgcttcgaagtc
atctccaagaggcccttgagaacggaggtgggtgatatgtctatagctgatgttaactcc
cggcttgatgatttggctgtcgcttctaaggaggacgcgcagctacccatcctagatgaa
ttttatcggcggatgaacccggaagagatgatgtggttgatcagaattattttacggcaa
atgaaagttggtgctaccgagcgtacattcttcgaaatatggcatccagatgcggaaagt
cttttcaatatttctagtagtcttcgccgagtatgctgggagttatacctaccaagtatt
cgccttgaggcggatgaagctcgtgtcactctaatgcaatgcttccagccgcagctggct
caatttcaaatgcactcctttcaaaagataattgaaaggatgaggttggctgaagatgat
cctgaattttggattgaagagaagctcgacggcgagcgcatgcagcttcatatggagacg
aacagctctatacccggcggaaagaggtttgaattttggtcaagaaaagctaaagaatac
acgtatctatatggaaatggtttctatgatgataatggatctctaacgagacatttgaaa
aatgcttttgctgatggagttgaaagtattatccttgatggagagatgattacctgggat
ccagaacaagacgcccccgtaccatttggtacgcttaagacggcggccttagcagagcaa
cgaaatccattttctgcaagtggccatcggcccctattcaggatatttgatatcgtttac
ctcaatggtaaacccctaacgagatatacacttcgggacaggcgtcgagcgctagaagcg
agtgtgattccggttcaccggcgttttgagattcacccctatgaagttggcaaaagtgcg
agtgatattgaacctctacttcggaaagtagtagcagaggcgtccgagggacttgtcttg
aagaacccgaactcaccatatcgcctcaacgaacgcaatgatgactggatgaaggtgaag
ccagattacatgactgaatttggagaatcgctggattgtattgtagtgggcggctattat
ggctctggcaaaagaggcggaaatatatcaagttacctctgcggcctgagggttgacgat
acgcatgccgaggacgggactaatccgatgaagtgctattccttctgtaaagttggaggg
ggatttacagcagcagattatgcaaacattcgtcaccataccgatggcaaatggcatgac
tggaatccaaaaaagccgcctactgaatatatagaacttgcaggtggtgatgcacaacat
gaacgacctgatgtctggatcaaacccgatgattcagttgttgtatgcgtcaaggctgca
gctgttacacctagtgatcaatttcgactgggactaacagttcgattccctcggtttaaa
cggctaaggatggacaaggactggcagagtgcgttgtccgtccaggaatttatagaccta
aaggccggggctgagcaggagaagaaagaaaaggactttcaagtggataactcccgcagg
aagaagaccaaaaggagtaagaagaaagaactcactgttgtcggctccggcgagccaaat
gttgcctatgttgggagcaaaactcatatttttgatgggctttcgttctgtgggttaaaa
atacaggctcttgaggtgaattatgctgatattcctatagttgtcatgaccgagtccgtg
aagccaatgaagaaatccaaagctgacctggaacagctgatcaaggcaaacggaggaaag
atataccaaacaaataacgcagcaaaggacacctattgtatcgcagacagaagaaccgta
aaggtggcatcattgcaaaaatctggccttgagaatgtcattcgaccttgctggatttct
gactgtatcagccaaaacgaacacgatactggggaaagcagcattttgcttcctctagag
ccacgacatatgttcttcactaaagaagatcaaaaggaggaaatcagcaataatgtcgac
aaatatgacgacagctttgccagagacaccaatatagcggaacttacagagatactacac
aagatggatgtgatatcagatatatctggagaagaacgactagacatcatgtctgatctt
actctagatggagatcaagggtggcttttcaaaaatctgacaatattctttgccccctgc
ggccatctgtccagtgtccccggagagccctgtgtcgatgggttgtcgatacgtcagcaa
ttggctcgaaacatcaccacttttacgggagccacagtgacggaccagcagaagaacaat
cggatcacccacgttattgttgatccctcggaggatagggatctggagactggcaaaacc
aaaaactatactactctgaggtcagagtttgcaacccgccgcaccattcctcatttcgtg
actgttcagtgggttgaagaatgttggaaagaaaagacactggttgatgaagagcgtacg
tattccatgctagccattgctctgccagggctctgctaa
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