Thermostichus vulcanus: NIES2134_110620
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Entry
NIES2134_110620 CDS
T05980
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tvn
Thermostichus vulcanus
Pathway
tvn03030
DNA replication
tvn03410
Base excision repair
tvn03420
Nucleotide excision repair
tvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIES2134_110620 (lig)
03410 Base excision repair
NIES2134_110620 (lig)
03420 Nucleotide excision repair
NIES2134_110620 (lig)
03430 Mismatch repair
NIES2134_110620 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvn03032
]
NIES2134_110620 (lig)
03400 DNA repair and recombination proteins [BR:
tvn03400
]
NIES2134_110620 (lig)
Enzymes [BR:
tvn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIES2134_110620 (lig)
DNA replication proteins [BR:
tvn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIES2134_110620 (lig)
DNA repair and recombination proteins [BR:
tvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIES2134_110620 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES2134_110620 (lig)
MMR (mismatch excision repair)
DNA ligase
NIES2134_110620 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES2134_110620 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAY51350
LinkDB
All DBs
Position
1081120..1083189
Genome browser
AA seq
689 aa
AA seq
DB search
MVLKEPPAERIQQLRCLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAYPEYITPDS
PTQRIGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRTLRQEEPLPPAEYV
CELKMDGVALALTYENGLLVRGATRGDGQRGEDITSNVRTIRPIPLRLALDNPPPVVEVR
GEAFLPLERFHQLNQERQAQGEPPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPE
GGSVPLGENQAGEPQSQRQVLYALQHLGFRVNPHHADCPDLEAVKAYYDRWQTARHQLPY
LTDGIVVKLNDLKLQQTLGFTQKFPRGSIAWKYEPEQAITDVLAITVQVGRTGALTPVAE
LAPVQLAGTTVSRATLHNADYIAELDLHIGDKVVIHKAGEIIPEIVRVFPELRPPTAQPF
TMPTACPECHQPVVRPANEAVSRCGNPRCPAIVRGQIRHWASRDALDIQGLGEKLVQQLV
TKELVRTPADLYRLTAAQLLSLERMGQKSADKLLVAIANSKQQPWPRVLYGLGIRHVGSV
NAQLLADRFKSVEELATATVADLCGVDGIGEEIAQAVQEWFQDPDHQALIADLQALGLQL
AAALHPAQKALTTEKSLNGKRFVITGTLPTLTREQAKALIQKHGGHVSEGVSRQTDYLVV
GEKAGSKLRRAQELGIPCINETELIQMCR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggtcttgaaggaaccccccgctgaacgaattcaacaactgcggtgcttacttcagcgt
gcgagctacgcctactacgccctcgatcagccgatcatggaagatgaggtctatgaccaa
ctctatcgcgagcttcaggaactagaggccgcttatcccgagtacattacccccgacagt
cccacccagcggatcggtgaagcgcccgtcagtcaatttgagagtgttagccatcgcatt
cccctctatagccttgaaaatgcctttacctttgccgacatggtggcgtggcaggaacgc
tggcagcgctattggcgcaccctacggcaagaggagcccctccccccagcagaatatgtc
tgcgaactcaaaatggatggcgtggctcttgccttaacctacgaaaacggtttactcgtg
cggggagcgactcggggcgatggccaacgcggtgaggatattaccagcaatgtgcgcaca
attcgcccaattcccctgcgattagcccttgacaatccaccccctgtcgttgaggttcgc
ggggaagcttttttgcctttggagcgattccatcaactcaaccaagaacgccaagcccag
ggggagccccccttcgccaatccccgcaatgccgcagccggtaccctgcgtcaactggat
ccccgcattgttgcccaacgccaattagacttttttgcctatgccctgcatttgcctgaa
gggggtagcgttcctttgggggagaaccaagcaggggaaccccaatcgcagcgtcaagtg
ctctatgcgctgcaacaccttggctttcgggtgaatccccaccatgccgactgccctgac
ctcgaggctgtgaaagcctactacgatcgctggcaaaccgcacgccaccaactgccctat
ctgaccgatggcattgtggtcaagctcaatgacttaaagctgcaacagacccttgggttt
acgcaaaagtttccccgaggttctattgcttggaagtacgaaccggagcaggccattacc
gatgtgctggcaattacggttcaggtgggacgcacaggggcccttactcctgtggctgaa
ctggcgccggtgcaattagcaggtaccactgtatcacgggcaacgttgcacaatgcagac
tacattgctgagttggatttgcacattggcgataaagtcgtcatccacaaagcaggggaa
atcattccagagattgtgcgggtgtttcctgaattgcgaccgccaacggctcaacccttt
acgatgcccaccgcctgtcccgaatgccaccagccagtggtgcgtcctgccaatgaggcg
gtgagtcgctgtggcaatcctcggtgtccagcgatcgtgcgcggccagatccggcactgg
gcaagtcgggatgccttggatattcaaggcctaggggaaaagctggtacagcaattggtg
acgaaggaattggtgcgcacccctgcggatctctatcgcctgacggcagcacaattgttg
agcctcgagcgtatgggtcaaaagtccgctgataaattgttggtggcgatcgccaactcg
aaacaacaaccgtggccacgggtgctctacggcttaggcattcgccatgtggggagtgtc
aatgcccaactgcttgccgatcgattcaagtctgttgaggaactcgccaccgccaccgtc
gccgatctgtgtggggtcgatggcattggtgaggaaattgcccaagcagttcaggagtgg
tttcaagaccctgatcaccaggctctaattgctgatctgcaggcgttgggactgcaactg
gcggcagcgcttcaccctgcgcaaaaggccctgacgacggagaaatccctcaatggcaaa
cgctttgtgattaccggcaccctgcccaccctcacccgtgagcaagcaaaagccctgatc
caaaaacacggcggccacgtgagtgagggtgtgagtcggcaaacggattatctggtggtg
ggcgaaaaagcagggagcaaattacgacgtgctcaagaattgggcatcccctgcatcaat
gaaacagaacttatacaaatgtgtcgttag
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integrated database retrieval system
