Trichosurus vulpecula (common brushtail): 118845505
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Entry
118845505 CDS
T10126
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118845505 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvp03400
]
118845505 (LIG4)
Enzymes [BR:
tvp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118845505 (LIG4)
DNA repair and recombination proteins [BR:
tvp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118845505 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
Phage_term_smal
Motif
Other DBs
NCBI-GeneID:
118845505
NCBI-ProteinID:
XP_036609313
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All DBs
Position
4:complement(383815811..383832451)
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AA seq
911 aa
AA seq
DB search
MATSQASRTVASQVPFADLCSTLERIQKSKSRPEKIKYFKEFLDSWRKFHDALHKNEKGV
TDSFYPAMRLILPQLERERMAYGIKETMFAKLYIELLNLPKEGKDAQKLLNYRTPTGTRG
DAGDFSMIAYFVLKPRCPKQGSLTIQQVNDVLDLIASNNSARRKDLVKKNLLQLITQSSA
LEQKWLIRMIIKDLKLGFSQQTIFSLFHRDAAELHGVTTDLEKVCRELHDPSVGLSDISI
TLFSAFKPMLAAVANIQRIEKDMKHQSFYIETKLDGERMQLHKDGDVYQFFSRNGYDYTE
QFGDSSLKGSLTPFIHNAFKTNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSEL
QTCYCVFDVLMVNNKKLGHETLRKRYEIIDSVFTPIKGRLEVVEKTEANTKKEVIDALND
AIDKREEGIMVKNPLSIYKPDKRGEGWLKIKPEYINELMDELDILIVGGYWGKGSRGGMM
SHFLCAVAETPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLSKHWKPFHKRAPPNSILC
GTEKPEVYIEPCNSVIVQVKAAEIVGSDMYKTDCTLRFPRIEKIREDKEWHECMTLDELE
NLRGKASGKLASKHLYIGGDDEEPQEKKRKALKVKKAIGIIEHLKAPDLSNINKISNVFE
DVEFCVMTGTDSHSKPDLENRIAELGGYIVQNPGPDTYCVVAGTENVRVKNIISSNKHDV
VKAEWLLDCFEAKECVPWQPRFMIHMCPSTKEHFAREYDRYGDSYFADTDLVQLKEVFSR
IKNVKENSSKEMSSVIADLEYRYSWDSCPLSMFRHCVIYVDMYAIINDPTTQIQGTRLSI
KALELRFHGARVVSCLEEGVSHVIIGEDHSRVEEFKAFRRTLKKKYKILQELWVADSLKK
GELQEENHYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccacttcacaagcttcacgaacggttgcatcacaggtgccttttgcagatttgtgt
tcaactttagaacgaatacaaaaaagtaaatcccgtccagaaaaaattaagtacttcaag
gaatttttagattcatggcggaagtttcatgatgctcttcataaaaatgaaaaaggagtc
acagactctttttatccagccatgagacttattcttccacaactggagcgagagaggatg
gcctatggaattaaagaaactatgtttgctaagctttatatagagctgcttaatttacca
aaagaaggaaaagatgctcagaaacttttaaactacagaacaccaactggaactcgtgga
gatgctggagacttttcaatgattgcatactttgtgttgaaaccccggtgtccaaaacaa
gggagcttaaccatacagcaagtcaatgatgttttagacttgattgctagcaacaattca
gccagaagaaaggatttggtaaagaagaaccttcttcagctcataactcagagctcagct
cttgaacaaaagtggcttatccgaatgattataaaggacttaaaactgggttttagccaa
caaactatattttctctttttcacagagatgctgctgagttgcatggtgttacaactgat
ctagaaaaagtctgcagggaacttcatgatccttcggttggactcagtgatatttcaatc
acattattttctgcttttaaaccaatgctggctgctgtggcaaatattcagaggatcgaa
aaggacatgaaacaccagagtttctacatagagacaaaactagatggtgagcgtatgcaa
ctgcataaagatggggatgtatatcagttcttttctcgaaatggatatgattacactgaa
cagtttggtgactcttcccttaaaggttctttaacaccatttattcataatgctttcaaa
acaaacatacaaaactgtattcttgatggtgagatgatggcctataaccccaacacacaa
acattcatgcagaagggaaataagtttgatattaaaagaatggtagaggattctgaactg
cagacatgttattgtgtttttgatgtgttgatggtcaataataaaaaactggggcatgag
accctgagaaaaaggtatgaaattattgatagtgtctttacacctataaaaggtagacta
gaagtggtagagaaaacagaggctaacaccaaaaaagaagtcattgatgccttaaatgat
gcgatagataaacgtgaggagggaatcatggttaaaaatccactttccatttacaaacct
gataaacgtggtgagggatggttaaaaattaagccagagtatataaatgagttaatggat
gaactggacattttaattgttggtggttattggggtaaaggttctcgaggaggaatgatg
tctcattttttgtgtgcagtagcagaaacaccccctcctggtgaaaagccatctgtgttt
catactctttgtcgtgttggttctggatacactatgaaagaactgtatgaccttggtttg
aaattatccaaacactggaaaccttttcataaaagagctccaccaaatagcatcttgtgt
ggtacagagaaaccagaagtttatattgagccttgtaattccgtcattgttcaagttaaa
gctgcagaaattgttggcagtgatatgtataaaactgattgcactctacgattccctcga
attgaaaagataagagaagacaaagagtggcatgagtgtatgactctggatgaactagaa
aaccttagggggaaagcatctggaaagcttgcttctaaacacctttatataggtggtgat
gatgaagaaccacaggaaaaaaaacgaaaagctttgaaggttaagaaagctattggaatc
attgaacacttgaaagctcctgatctttctaacataaacaaaatttctaacgtatttgaa
gatgtggaattttgtgtcatgactggaacagacagccattcaaaacccgatctggagaat
cgcatagcagaattgggtggttatattgtacagaaccctggcccagacacatattgtgta
gttgcaggtactgagaatgtgagagtgaaaaatatcatctcttcaaacaagcatgatgtt
gtaaaagcagagtggctcttagattgttttgaggccaaagaatgtgttccatggcagcct
cgctttatgattcatatgtgtccatccacaaaagaacattttgcccgtgaatatgaccgc
tatggtgacagctactttgctgatacagatttggtacaactgaaggaagtattctcaaga
attaaaaatgttaaggaaaatagttctaaggaaatgtcttcagtaattgcagatttagaa
tatcgttactcctgggacagctgccctctcagtatgttccgacactgtgtcatatatgtg
gatatgtatgctattattaatgaccccactacacaaatccaaggaaccaggctatccatt
aaagccctggagcttcggtttcatggagcaagagtcgtttcatgtttagaagaaggagta
tcccatgtaatcattggggaggatcacagtcgtgttgaggaatttaaagcttttcgtaga
actcttaagaaaaagtacaaaatcttacaagaactttgggtagctgattctttgaaaaag
ggtgagttacaggaagaaaatcattacttgttgtga
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