Thioalkalivibrio versutus: TVD_05060
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Entry
TVD_05060 CDS
T03959
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tvr
Thioalkalivibrio versutus
Pathway
tvr03030
DNA replication
tvr03410
Base excision repair
tvr03420
Nucleotide excision repair
tvr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TVD_05060 (ligA)
03410 Base excision repair
TVD_05060 (ligA)
03420 Nucleotide excision repair
TVD_05060 (ligA)
03430 Mismatch repair
TVD_05060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvr03032
]
TVD_05060 (ligA)
03400 DNA repair and recombination proteins [BR:
tvr03400
]
TVD_05060 (ligA)
Enzymes [BR:
tvr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TVD_05060 (ligA)
DNA replication proteins [BR:
tvr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TVD_05060 (ligA)
DNA repair and recombination proteins [BR:
tvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TVD_05060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TVD_05060 (ligA)
MMR (mismatch excision repair)
DNA ligase
TVD_05060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TVD_05060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKJ94777
UniProt:
A0A0G3G5K3
LinkDB
All DBs
Position
1067542..1069632
Genome browser
AA seq
696 aa
AA seq
DB search
MSRSGSPASQAGSTDSPKTRIDALRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEA
DHPEFVTPDSPTQRVGATPAEGFATVRHRLPMLSLANGFEADAIRDFDRRVRERLAKQTG
DPARGEGAVTYMAEPKLDGLAISLIYEDGRLVQAATRGDGETGEDVTANVRTVRPIPLHL
GDRFTNDAPRVLEVRGEVFMRRADFERLNAGLEADGLRGFMNPRNAAAGSLRQLDSKVTA
RRPLSFFAYSVGFVEGGTLPDTQSGTLDWLQRLGFPACPEREVLEGVEACLDYYERLAAR
RAGLDYEIDGIVYKVDALADQQQLGFVSRAPRWAIAHKFPAEERTTTLHNVEFRVGRTGA
LTPVARLEPVLVGGVMVSNATLHNMDEIARKDVRIGDRVIVRRAGDVIPEVVGRAGGERP
ADTRAIEMPAACPECDSHIERTEGEVVARCTGGLVCPAQRREALKHFVSRRAMDIEGFGE
KIIEQLADGGVVQSPADLFALDAERLEALERVGPKLAANLVNALEQARETTLARFIFALG
IREVGEVTARNLAEYYGDLDALMQADAEALQEVPDVGPIVAEHIANFFAEPHNLEVIRAL
REAGVHWPDPPRREAAETGDDAPLAGCTYVLTGSFDTMTRDEAKAALEARGAKITGSVSK
KTTAVIAGADPGSKVTKAESLDIPIFGPDDLAQLLA
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagccggtcgggttcgcctgcctcgcaggctggctcgacggattctccgaagacgcgc
atcgacgcgctgcgtcgccagatcgagcatcacaactaccgctactacgtgctcgacgac
cccgaggtatcggacgccgagttcgacgccctgatgcgcgagctggagcaactggaggcg
gaccacccggagtttgtcacccccgattcgcccacccagcgcgtgggcgccaccccggcc
gagggctttgccaccgtccggcatcgcctgccgatgctgtcgctcgccaacggcttcgag
gcggacgcgatccgcgacttcgaccgccgggtgcgcgagcgtctggcgaaacagactggc
gaccctgcgcgcggcgagggcgccgtcacctacatggccgagcccaagctggacggcctc
gccatcagcctgatctacgaggacgggcgcctggtccaggctgccacccgcggcgacggc
gagaccggcgaggacgtaaccgcgaacgtgcgcaccgtgcgcccgatcccgctgcatttg
ggcgaccgcttcaccaacgacgccccgcgggtgctggaggtgcgtggcgaggtcttcatg
cgccgggccgacttcgagcgcctgaatgccgggctggaggccgatggcctgcgcggcttc
atgaacccgcgcaatgccgccgccggcagcttgcgccagctggactcgaaggtgaccgcc
cgccgcccgctcagcttctttgcctactcggtgggcttcgtcgagggcgggacgctgccg
gacacccagtccggcaccctggactggctgcagcgcctgggcttcccggcctgcccggag
cgcgaggtgctggagggtgtcgaggcctgtctcgactactacgagcgcctcgccgcccgc
cgcgcggggctggattacgagatcgacggcatcgtgtacaaggtggatgccctggccgat
caacagcagctgggcttcgtctcgcgcgcgccgcgctgggccatcgcccacaagttcccg
gcggaggagcgcaccaccacgctgcacaatgtcgaattccgtgtcggccgcaccggcgcg
ctcaccccggtggcgcgcctggagccggtgctggtgggtggagtgatggttagcaacgcc
acgctgcacaacatggacgagatcgcgcgcaaggacgtgcgcatcggcgaccgcgtgatc
gtgcgccgcgccggcgacgtgatccccgaggtggtcggccgtgccggcggtgagcgcccc
gcggacacccgcgccatcgagatgcccgcggcctgcccggagtgcgactcgcacatcgag
cgcaccgaaggcgaggtcgtcgcccgctgtaccggcgggctggtatgcccggcgcagcgg
cgcgaggccctcaagcacttcgtctcgcgccgcgcgatggatatcgagggcttcggcgag
aagatcatcgagcagctggccgacggcggcgtcgtgcaaagcccggcggatctcttcgcc
ctggatgccgaacgcctcgaggcgctggaacgggtcggccccaagcttgccgcgaacttg
gtcaacgcgctggaacaggcgcgcgagaccacgctggcgcgcttcatcttcgcgctcggt
atccgcgaggtgggggaggtcaccgcccgcaacctggccgaatactacggcgacctcgac
gcgctgatgcaggcggatgccgaggcgctgcaggaagtcccggatgtcggccccatcgtt
gccgagcacatcgccaacttcttcgccgagccgcacaacctcgaggtgatccgcgccctg
cgcgaggccggtgtgcactggcccgacccgccccggcgcgaggccgcggagaccggtgac
gacgcgcctctggccggctgcacctacgtcctcaccggcagcttcgacaccatgacccgc
gacgaggccaaggccgccctcgaggcccgcggcgccaagatcaccggctccgtctccaaa
aagaccaccgccgtcatcgccggcgccgaccccggctccaaggtcaccaaggccgaatcc
ctcgacatccccatcttcggccccgacgacctcgcccaactcctcgcctga
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