Trametes versicolor: TRAVEDRAFT_124375
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Entry
TRAVEDRAFT_124375 CDS
T04795
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tvs
Trametes versicolor
Pathway
tvs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TRAVEDRAFT_124375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvs03400
]
TRAVEDRAFT_124375
Enzymes [BR:
tvs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TRAVEDRAFT_124375
DNA repair and recombination proteins [BR:
tvs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TRAVEDRAFT_124375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
19407945
NCBI-ProteinID:
XP_008038631
JGI:
124375
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MSSPAKETEVPFSFFVELVQAIAAIKPHRAADKQPRSTRWVDTPTYKTFKRWLGALRERY
APLPAGMTTIVFRLLFPEEDVRRKYGLQEIRMAQYLTKILGVSTAAGGRGERLRKWKGED
ALGCLGNEVERVMDGRSIASVSSISLCRVDSLLSELAGKCAYSAEVYREGTHMSRRSREA
ILSELYTSLTPAKSAVMTQIILKDLRPLLYPIPQSACHYTSALLEYKSNAVAMLTKESAM
HAWDSSGRMSLIFKTRANLEEAATAFEGLNNGEVFPQPTVGVQIQIPKCVKGQGPAQSLK
SLKGADKVWVETKYDGERAQIHVWFDDDGDPRIRIFSKSGRDSTLDRAGIHSIVYAALGI
PYPGSYAEADAQSSDTLPFKRGIVVEAEMVAYSDALGRIDEFWRIRSLIARTAIGVRHRS
PPPGPSTQEEVMETQCSLISNGTDGGTRHLALVFFDILLLDDASLLPVPYGQRREVLERL
INVKPGYAMLAERTCIDTTLPNGEEMLRRAFARVVADHQEGVVIKADDAGYAEKRWPWVK
LKQDYIPGHGDAVDLVLLGASWEKERARELRVPPTAYTTFYFGALSNADELKKHPNRLPH
FEIIFTSSYGLDRAQLEELIFLIQNSDSAPYRHQAAASLSYTHTLSRSLSPPTVLLREPL
LAELFGAGFTKSPGNRFYELRFPRIAKIFRPSDRPWLDGTTLPEFQQIARTSVGRDRTGK
AEDDWAHSIFRPDVPPSPGLHCPVKRKRTEDMWVERLALVDAKVGSRSPTKRMRIDVPPT
RVTQGVRRENAENETGPSASVAAAGASGSPRQRVGMLRLDSVTNVVSFPPPLAPPSTSPL
SRRRNKDPCAPEPSNRPQSPPSSPPRLNNPIPSQPPAHMENTNQPFSLNAPGYSGTPTDR
LIVLTHSNEGMDAPQPQDPSARAPTPDELYYPSVQERPLDPVPFIPTARTLYQFLHNSVV
WLARPDGAPRPAWRAASQAIIPPSSRVNTLEAVVLACGWSETLACAWAARGVVFVDDSQD
GGAWSLQETMKELAALRAAALNAGKAAACKPVFLLSMTMLAHDALTETATVEEWESRAIC
RFG
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcccgcgaaggaaacagaggttcctttctcattcttcgttgagcttgtgcaa
gcaattgcagcgatcaaaccccatagggccgcagacaagcagccacgcagtacgcgctgg
gtcgacacacccacatacaagaccttcaaacgatggctcggtgctctacgcgagcggtac
gcaccgctgcctgccggtatgaccaccatcgtcttccgcctgcttttccccgaagaggat
gtccgccgcaagtatgggttgcaggaaattcgcatggcacagtaccttacaaagatcctt
ggagtctctaccgccgctggtgggagaggtgaacgactgaggaagtggaaaggcgaggat
gccctcggttgtcttggcaatgaagtcgaaagggtcatggacggccgctcgatagctagc
gtaagcagcataagcctctgtcgagtggattcgcttctctcggagctcgcaggtaaatgc
gcgtactccgctgaagtgtacagagaaggcacgcacatgagccgtcgctcgagagaagcc
attctctccgagctatacacttccttaactccggcaaagagcgcggtcatgacgcagatc
atcctaaaggacctccgtcccttgttataccccatcccacaatctgcatgtcattacacg
tccgcgctcctggagtataaaagtaacgctgtggcgatgctcacgaaagagtctgccatg
catgcatgggactcttccggtcgcatgtcgttgatcttcaagacgagggcaaacctagaa
gaggctgcaaccgctttcgaaggactcaacaacggcgaagtgtttcctcagcccacagtg
ggagtgcaaattcaaattccgaaatgtgtcaagggtcaaggacccgcccagtctctcaag
tctctgaaaggagcggataaagtttgggtagagaccaagtacgacggagaacgtgcccag
atccacgtatggttcgatgacgacggcgacccgcgcatccgtatcttcagcaaaagcggg
cgggactccaccctagatagagcgggcatccattccatcgtatatgctgcgctcgggatc
ccatacccaggttcatacgctgaagcggatgcgcagagctctgacacactacccttcaaa
cgtggcatcgtagtcgaggctgagatggtcgcatatagtgatgcactcgggcgcatagat
gaattttggcgcatacggagtctcatcgcaagaactgctatcggcgtgcgccatagaagt
ccgccgcctggaccatccactcaggaggaggttatggaaacccagtgctccttaatctct
aatggaacagacggcggcacacgccatctcgctctcgtgttcttcgacatcctgcttctc
gacgacgcctccctcctccctgttccatacggtcagcgacgcgaggttctagaacgcctc
atcaacgtgaaacccgggtacgcgatgctcgccgagcgtacttgtatcgacacaacactt
ccgaatggggaggaaatgcttagaagggcgttcgcgcgtgttgtggcggaccaccaggaa
ggtgtggtgatcaaggcggacgacgcagggtatgcggagaagcgatggccgtgggtcaag
ttaaagcaggactacatccctggtcatggcgatgccgtggatcttgtcctccttggggca
tcgtgggagaaggagcgtgcgagagaattaagagttcccccgacggcctatacaactttt
tacttcggcgcgctctctaatgcggatgagcttaaaaaacatcccaaccgcctaccacac
ttcgaaataatattcacgtcgtcgtacggcctcgaccgggcgcaactggaagagttgatc
ttcttgattcaaaattcggactctgcaccatatcgccatcaggcggctgccagtctatca
tacactcatacgcttagccggagcctctctcctcctaccgttctccttcgggagccgctg
ctggccgagctctttggggcaggcttcaccaagtcccctggcaaccgcttctacgagcta
cgtttcccgcggatagctaagatcttccgtccatccgatcgcccgtggctggacggcaca
acgctcccagagttccagcaaattgcccgcacctccgttgggcgcgaccgcaccggcaag
gctgaggacgactgggcacattccatatttcgccccgacgtgcctccctcgcccggtctg
cattgtccggtgaagcggaagcgcacggaggacatgtgggtagaacgcctcgcgctcgtc
gacgccaaggtgggctcgcgaagccccacgaagcggatgcgcatcgacgtccctcctaca
cgggtcacgcagggggtgcgtcgggagaatgctgagaacgagacaggaccttccgcctct
gtggcagccgcaggtgcaagtggcagcccaagacaaagggttggaatgctgcgtttagac
tctgtcacgaacgtggtgtcgttcccaccaccgctagcccctccttcgacatcgcctttg
tcgcgacgtcgcaacaaagacccttgtgctcctgagccctcaaataggccgcagagccct
ccttcttcgccaccacgcttaaataaccccatacccagtcaacccccagcacatatggag
aacaccaaccagccgttctccctgaacgctcccgggtactcgggcacccccactgatagg
ctgatagttctaacacactccaacgaagggatggacgccccccaaccgcaagatccgtcc
gcccgcgcgccgactccggatgagctttactacccaagtgtgcaggaacggcctcttgat
cctgtcccattcattcctacagcacgcaccctctaccagttcctgcacaactccgtagtc
tggctggcccgtccagacggtgccccgcgccccgcttggcgcgcggcgtcccaggcgatc
attcccccgagcagcagggtcaacacgctggaggcggtggtgctcgcgtgtgggtggagt
gagacactcgcttgtgcatgggcggcacgcggcgtcgtgttcgtggacgactcccaggac
ggcggcgcgtggtcgctccaagagaccatgaaggagctggcggcgttaagagcggcagcg
ctgaatgcgggtaaggcggcggcgtgcaagccggtattcctgctcagtatgacgatgctc
gcgcatgacgcgctcacggagacggcgacggtggaggagtgggagagccgggccatctgt
cgattcggttaa
DBGET
integrated database retrieval system
