Trametes versicolor: TRAVEDRAFT_146112
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Entry
TRAVEDRAFT_146112 CDS
T04795
Name
(RefSeq) uncharacterized protein
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
tvs
Trametes versicolor
Pathway
tvs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRAVEDRAFT_146112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvs03019
]
TRAVEDRAFT_146112
03032 DNA replication proteins [BR:
tvs03032
]
TRAVEDRAFT_146112
Messenger RNA biogenesis [BR:
tvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
TRAVEDRAFT_146112
mRNA cycle factors
Common to processing body (P body) and stress granule
TRAVEDRAFT_146112
DNA replication proteins [BR:
tvs03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
TRAVEDRAFT_146112
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN_4
EST1_DNA_bind
Motif
Other DBs
NCBI-GeneID:
19409499
NCBI-ProteinID:
XP_008036861
JGI:
146112
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MQEPSQTKIATPSRKGKEREPDIADKIIALRRKQAAIAVPRERPERTQPSTSSRPTPMHP
SSPRRLHAPPVPSPNIVVSEASPSHMDADPEDFSRRLKISYGSPRASHARPAANGSPGKL
YNPNTDPVRRPAMTAEPEVMSDGASSSHSPRAAPSRAQPSQAPRGAQDAHRQLFDPRKHD
AVLFSSQHRHHGSSAPPNPSSNVGRPTPTPKSSGDWVSASSTSSVSYAHSTISSNFTLSS
ATTDSSSASSALFDTSNPSRKSEDSASSANAFSRKLKEVYRTISGLESRLLGNASERERA
DDSERGAHRPGVLIKGRPASTGAPRSGASEEEESERWRKLVSDHRALAESIREMLALTLA
PTVPASLKNIPQKYNLIIRLWSHAFYHLLESLRHAARPPTTSPVALEYLQQFLNYAYVFY
GGLFEERNYSQYRGAFLEALGDLSRYWMAVSALVEGTHIPSNTLTSSAVAKNNLLVAPTP
RPSTPNATTDALDLPSNAVSPTPARIDDSPQSSEAEMPVGADAIAGGAAHMQNIPSVGQE
AARLMELDPDKERWRQVAKEWFARGLAITPNSGKLQHHLGLLCRDKDGTDEELRGVYHFV
KSMVAFHPFSTARESVLAMWSPTAQARRQAPDARLSELFVCLHGMLFTNIQLDDFKLVLE
RFREKLEIGDGEQVEEREWIMMALINIGSLFEYGRPTAVLRRVAGVESRTPGAPGASPVL
ANSAQAGRLKVLMAKRLDGDLSKMEIDDEDVDIDKSSLGTSEVPSPTSAEPELPAALQLA
MELTFVMLSHTLRNPVRRASEYATPTLNPYNTVILTFLATVLRDQSARAALERSVPWEDL
ASFLSNNIPRRDILREHQKVSAESGILLTSGCKPLPEDWCIRGMGWGGKKVFERGFWTKD
SDTAGEERNIEVEVLDRVEVADQAMDGLVEDEDDGREGANAGDNHPDKRRWVRLTRAGLR
IARDVHGFKFAAASPEDGRPCWRVEGALAAKVARWSEEERHARDAEEQRMRGTRWEDDSM
EVDDVEGGQVDDDLSEDAEDNEQDPEEIRRLKARRRYLQALLESGQHDGASPSRRSRGSP
ARKTEAVRQSLQMVAGYTVLVVDTNILLSSLSEFSALVESGLWTLVVPLPVVMELDSQSS
NATPLGQAAGAALEYISTHVRSHATSLKVLTSRGNYLSNLNVRTEQIDFTNGARNMDDLI
LRAALWQDEHWVDRSALLRSDGSVQDTSGAAKVSLLSFDRMLRLKARSRQLYAANEQDLA
RILATGT
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagccgtcccagaccaaaatcgcgaccccttcgaggaaaggcaaggagagggaa
ccagacatcgcggacaagataatcgctctcaggcgaaaacaggcagcgatagctgtacca
cgcgagcggcccgagaggacgcaaccctcaacctcgtccagacccacccccatgcaccca
tcttcgccgcgaaggttacatgcgccacccgtccccagtccgaacatcgttgtttcggaa
gcctctccatctcatatggacgcagaccccgaggacttttcgcgccgcctcaagatctcg
tacgggtcgccaagagcttcacatgcgcggccagccgcgaacgggagccccggtaagctc
tacaacccgaacaccgacccagtgcggagacccgccatgaccgccgagcctgaagtgatg
tccgacggcgcatcaagctcgcattcccctcgcgccgccccatcgcgagcacaaccctca
caagcaccgcgcggcgcacaagatgctcatcgacaactgttcgatcctcgcaaacatgac
gccgtcctcttctcctcgcagcatcgccatcacggctcatctgcacctcccaacccctcc
tccaacgtcggtcgcccaacccccacaccgaaatcatctggcgactgggtctctgcatcc
tcaacatcttcagtatcttatgcacactctactatatcctctaatttcacactctcttcc
gccactaccgactcatcttccgcctcttcggcactcttcgatacctcaaatccaagtcgg
aaatcggaggatagcgcgtctagcgccaacgcgttctcgcgcaagctgaaggaagtctac
cgcaccatcagtgggctggagagcagactccttgggaatgcgagcgagcgggaacgcgca
gatgatagcgagcgtggtgcgcacagaccgggcgttctgatcaaagggcgtccggcgagc
acgggcgcaccgcggtccggggcaagcgaggaggaagaatctgagcgatggcgtaaattg
gtctctgaccaccgagcactcgcggagagcatccgtgagatgctcgcactcacattagcg
ccaaccgttcccgcgtcgctcaagaatatcccccagaagtacaacctgatcattcgtcta
tggtcacatgccttctatcacctgctcgagtctctgcgacacgcagcgcgccctccgaca
acatctccagtcgcgctggagtacctgcagcaattcctgaactacgcgtacgtgttttac
ggcggtctgttcgaggagcgcaactactcgcagtaccgcggggccttccttgaagcactc
ggcgacctctcccggtattggatggccgtgagcgcgctggtggaggggacgcacatcccc
agcaacaccctcacgtcctccgcagtcgcgaagaacaacctgctagtcgcgcccacacca
aggccgtcgaccccgaacgccacaaccgacgcgttggacctcccctccaacgcggtctct
ccgacgcccgcacgtatcgacgatagtccgcaatcctcggaagccgagatgccggtcggc
gcggacgcgatagccggcggtgctgcgcacatgcagaacatccctagcgtcgggcaggag
gccgcgcgcctcatggagctggacccggacaaggagcgatggagacaggttgcgaaggag
tggttcgcgcgcgggcttgccatcacgcccaactccggcaagctgcagcaccacctcggc
ctactgtgccgtgacaaggacggcacggacgaggagctgcgcggcgtgtatcacttcgtg
aagagtatggttgccttccatccgttctccacggcgcgcgagtcggtcctggccatgtgg
tcaccgacagcccaggcgcggcgtcaggcgcccgatgctcgcctgagcgagctctttgtg
tgcctgcacgggatgctgttcacgaacatccagctcgatgatttcaagctggtgctggag
cgcttccgggagaagctcgagattggagacggcgagcaggtcgaggagcgcgaatggatc
atgatggcgctcatcaacatcgggtccctcttcgagtacggccgccccaccgctgtccta
cgacgcgtcgcgggagtggagtcgcgcacacccggtgccccgggcgccagcccggtgctt
gctaacagtgcgcaggcgggaaggctgaaggtgttgatggccaaacgtctcgacggcgat
ctctccaagatggagatcgacgatgaggacgttgacatcgacaagtcctcccttggcacg
agcgaggtgccttccccgacatcggcggaacccgaacttcccgcagcgcttcagctcgcc
atggaactcaccttcgtcatgctctcgcatacactccgcaacccagttcgccgggccagt
gaatacgcgacgccaacgctcaacccgtacaacacggtcatcctcacgttcctcgctacc
gttctccgggaccaatccgcccgggctgcgctcgagcgctcagtcccctgggaggacctc
gcgtccttcctctcgaacaacattccccgccgcgatatccttcgcgaacaccagaaggtt
agcgcggagagcggcattctcctgacgagcggctgcaaaccgctcccggaggactggtgc
attcgcggcatgggctggggcggcaagaaggtcttcgagcgcgggttctggacgaaggac
tcggacaccgccggcgaggagcgcaacatcgaggtcgaagtgctcgaccgcgttgaggta
gctgaccaggcgatggatggactcgtcgaggacgaggacgacgggcgcgagggcgcgaac
gcgggcgacaaccaccccgacaagcggcgctgggtgcgcctcacgcgcgcgggcttgcgc
atcgcgcgtgacgtgcatggcttcaagttcgccgcggcgtcgcccgaggacggccggccg
tgctggcgcgtcgagggcgcgctcgcagcgaaggtcgcgcgctggagcgaggaagagagg
cacgcgcgggacgcggaggagcagcgcatgcggggaacgcgctgggaggacgactcgatg
gaggtggacgacgtggaaggcgggcaggtggatgatgacttgagcgaagacgcggaggac
aacgagcaggatccagaggagattcggcggctgaaggctcgccggcgatacttgcaggcg
ctcctagagtccggtcaacacgatggcgcatcgccaagccgccgctcgcgaggatcacct
gcgaggaagacggaggctgtgcgccaatcgctccagatggtcgcagggtacaccgtgctc
gtcgtcgacaccaacatcctcctctcgtctctctctgagttttctgcgttggtcgaaagc
ggcctctggaccctcgttgtacccctccccgtcgtcatggagctcgacagccagtcgtcg
aacgcgacgccgctcggccaggccgcaggcgctgcgctcgagtacatttcgacgcacgtt
cgctcgcatgcaacgtcgctgaaggtcctgacctcgcgtggcaactacctgtcgaacctc
aacgtgcgcacagagcagatcgacttcacgaacggtgcgcgcaacatggacgaccttatc
ctccgcgccgcgttgtggcaagacgagcactgggtcgaccggtctgcgctcctcaggagc
gatggctctgtgcaggatacctctggtgcagcgaaggtctcccttctcagcttcgaccgc
atgctccgcctgaaggcccgctcccgtcaactctacgccgccaacgagcaggatctcgca
cgcatcctcgctaccggcacataa
DBGET
integrated database retrieval system
