Thermoactinomyces vulgaris: AB849_006810
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Entry
AB849_006810 CDS
T05864
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tvu
Thermoactinomyces vulgaris
Pathway
tvu03030
DNA replication
tvu03410
Base excision repair
tvu03420
Nucleotide excision repair
tvu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB849_006810 (ligA)
03410 Base excision repair
AB849_006810 (ligA)
03420 Nucleotide excision repair
AB849_006810 (ligA)
03430 Mismatch repair
AB849_006810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvu03032
]
AB849_006810 (ligA)
03400 DNA repair and recombination proteins [BR:
tvu03400
]
AB849_006810 (ligA)
Enzymes [BR:
tvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB849_006810 (ligA)
DNA replication proteins [BR:
tvu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB849_006810 (ligA)
DNA repair and recombination proteins [BR:
tvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB849_006810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB849_006810 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB849_006810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB849_006810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
RNA_ligase
Zn_ribbon_NUD
Beta-prop_WDR35_TULP_N
HNOB
Motif
Other DBs
NCBI-ProteinID:
QBK13338
LinkDB
All DBs
Position
1328815..1330884
Genome browser
AA seq
689 aa
AA seq
DB search
MLPSRKNDEQEDEVGLKLEEAKKRVLELHDEINEHNHRYYVLDDPAISDAEYDRLMRELM
ALEKKFPELKTPDSPTQRVGGEPLPYFEKVEHTAPMLSLGNAFDEQDLRDFDERVRKAAG
RQNVRYVCELKIDGLAVSVKYEDGRFVLGSTRGDGITGEDITQNLKTIRSLPLRINEPLS
IEVRGEAYMPRRAFERLNRERAENGEPLFANPRNAAAGSLRQLDPKLAARRTLDLFVYEI
GQLEGHTVQTHTEGLQFLETLGFKVNPARQTVESVEEMLAFIEKWGKNRPDLPYEIDGIV
IKVDELALRKQMGNTAKSPRWAIAYKFPAEEAVTRLLDITLNVGRTGVVTPTAVLEPVSL
AGTTVQRASLHNEDLIREKDIRIHDYVVVKKAGDIIPEVVGVLTEKRTGGEKAFSMPEHC
PECGSGLVRLEGEVALRCINPECPAQTREGIIHFVSRGAMNIEGLGEKVVTQLFNHGLVR
SVADLYYLEKEDLLQLERMGEKSVQNLLEAIEKSKRNSLERLLFGLGIRFVGAKGAKILA
QHFKHMDALMEAGMEELLALDEIGPKMADSVVTYMEKPEVRETINRLKEAGVNMEYKGPG
ADGEKAVASSPLAGKTVVITGTLQKMSRKEATDLLESLGANVTGSVSKKTDLLVAGEKAG
SKLDKAKKLDVTIWDEETLLSHLPEEVRV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgctcccatcacgaaagaatgatgaacaggaggatgaagttggattgaagctggaagag
gcaaagaaacgcgtgctggaattgcatgatgaaatcaatgaacataaccaccggtattat
gttttggatgatccggccatttccgatgccgagtatgaccggttgatgcgcgagctcatg
gcattggaaaagaaatttcccgaactgaaaaccccggattcccccacccagcgggttggc
ggagaaccgcttccttattttgaaaaagtcgagcacaccgccccgatgctcagtttgggg
aacgcttttgacgagcaggatttgcgtgattttgacgagcgtgtgagaaaagcggccggc
cgccaaaatgtccgttatgtttgcgagttgaaaatcgacgggttggcggtttccgtcaaa
tatgaagacggccgttttgtcttgggatccacccggggagatggcatcaccggggaagat
atcacgcaaaacttaaaaacgatccggtccctgcctttgcgcatcaacgaaccgctttcc
atcgaagttcgcggggaagcgtacatgccgcggcgggcttttgaacgcttgaaccgggaa
cgggccgaaaacggggaacctttatttgccaacccgcgcaatgcggcagccggttcgctt
cgccagctggatcccaaattggcggcccggcggacgctggatttgtttgtttatgagatc
ggacaattggaaggccataccgtccaaacccacaccgaagggcttcaatttttggagacg
ttgggctttaaggtgaatccggcccggcagacggtggaatccgtggaggaaatgctggct
ttcattgaaaaatggggaaagaaccgcccggatcttccttacgagattgacggcattgtg
atcaaagtcgatgaattggcgttaagaaaacagatggggaacaccgccaaaagcccccgt
tgggccattgcctataaattcccggcggaagaagccgtcacccgtcttttggacatcacc
ctgaatgtcggtcggaccggcgtggtgacaccgactgccgttttggagccggtcagcctg
gccggaaccaccgtccaacgagcttctctgcataacgaagacttgatccgtgaaaaagat
atccggatccatgattatgtggtggtgaaaaaagcaggagacatcattccggaagtggtg
ggcgttctcaccgaaaagcgcaccggcggagaaaaagcgttttccatgccggaacactgt
ccggagtgtggcagcgggctggtccgccttgaaggtgaagtggcgcttcgctgcatcaat
cccgaatgtccggcgcagactcgggaaggcatcatccattttgtttcgcgtggtgcgatg
aatatcgaagggctgggcgaaaaagtggtgacccagctgtttaaccacggtttggtgcga
agcgtggcggatctttattaccttgaaaaagaagatttgttacagctggagagaatggga
gaaaaatcggtccaaaaccttctggaagccattgaaaaaagcaaacggaattcgctggaa
cggttgttgttcgggctggggatccgttttgtcggagccaaaggggccaaaattctggcg
caacacttcaagcatatggatgccctgatggaggcgggcatggaagaattgcttgccttg
gatgagatcgggccgaaaatggcagacagcgtggtcacctacatggaaaaaccggaagtc
cgggaaacgatcaatcgtttgaaagaagccggcgtgaatatggaatacaaagggccgggt
gcggatggagaaaaagccgttgcatcatcaccgttggccggaaagacggtcgtcatcaca
ggaacattgcagaagatgtcccgcaaagaggcaacggacctgctcgaatcgttgggggcc
aatgtcaccggaagcgtcagcaaaaagacggatttgttggttgccggcgaaaaagcgggc
tccaaactggacaaagcgaaaaaattggatgtgacgatttgggatgaagaaacgttgttg
agccatttgccggaagaagtgcgggtataa
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