Thiorhodovibrio winogradskyi: Thiowin_04439
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Entry
Thiowin_04439 CDS
T09736
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
twg
Thiorhodovibrio winogradskyi
Pathway
twg03030
DNA replication
twg03410
Base excision repair
twg03420
Nucleotide excision repair
twg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
twg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thiowin_04439 (ligA_2)
03410 Base excision repair
Thiowin_04439 (ligA_2)
03420 Nucleotide excision repair
Thiowin_04439 (ligA_2)
03430 Mismatch repair
Thiowin_04439 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
twg03032
]
Thiowin_04439 (ligA_2)
03400 DNA repair and recombination proteins [BR:
twg03400
]
Thiowin_04439 (ligA_2)
Enzymes [BR:
twg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Thiowin_04439 (ligA_2)
DNA replication proteins [BR:
twg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thiowin_04439 (ligA_2)
DNA repair and recombination proteins [BR:
twg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Thiowin_04439 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thiowin_04439 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
Thiowin_04439 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thiowin_04439 (ligA_2)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
PaaX_C
Peptidase_S58
Motif
Other DBs
NCBI-ProteinID:
WPL19322
LinkDB
All DBs
Position
4739962..4742016
Genome browser
AA seq
684 aa
AA seq
DB search
MKETSPTKPGEAHAKELHRLLEQHNYRYFVLDDPEIPDAEFDALLRELQQIEEQHPELRT
PDSPTQRVGAPPAERFAPAEHLAPMLSLGNARTPDDLRDFDQRIRRELGLEQVRYVAEPK
LDGLAISLLYEDGLLTRAATRGDGRTGEEVTAQVRTIGAVPLRLRGTDWPRRLEVRGEVY
LPLAGFEALKQRMLDQGQTPFKNPRNAAAGSLRQLDPCITASRPLTMFCHGFGAVDGGDL
GATQSAALARLRDFGLRVCPESTCVTGAEGCIDYQGAMAARRDALDYEIDGVVFKVDDLA
AQRRLGFRARDPIWAIAFKYPPREEQTKVRAVEFQVGRTGAVTPVARLEPVDVAGVTVSN
ATLHNIDEVHRKDVRAGDTVIVRRAGDVIPEVVGVVTALRPPGTEPVALPSHCPVCGSDV
IRAEGEAVARCSGGLICSAQRKEALKHFASRRALDIDGLGDKLIEQLIEQDLVKTPADLF
ALSPEQLSNLPRMGEKSAKNLVAKLDQSRETTLARFIHALGIREVGETMATALAMHFGAL
EPLMEADEEALIAIDGVGQRVAQHIRGFFAQEHNREVIAHLIDPDGARLHWPDPPRPNAP
KDLPLTGTTFVLTGTLTRPRDDMKAELIARGAKVTGAVSSNTDYVVAGENPGSKATKAAQ
LGIPVLDETQLRLLLADPGPNGLP
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagacaagcccgacgaagccaggcgaagcacacgcaaaagaactccatcgccta
ctcgagcaacataattatcgctacttcgtcctggatgacccggagattccggacgctgaa
ttcgacgccctgctgcgcgaactccagcaaatcgaggaacagcatcccgaactgcgcacg
ccagattcgcctacccagcgggttggcgcaccaccggccgagcgcttcgccccggcggag
catctggcgcccatgctctcgctcggcaacgcccgcacccctgatgatctgcgcgacttc
gaccagcgcattcggcgcgaactcggccttgagcaagtgcgctatgtcgccgagcccaag
cttgacggcctggccatcagcttgctttatgaagacggcctgctgactcgggccgccacc
cggggtgatgggcgcaccggcgaggaggtcaccgcgcaggtccgcaccattggtgccgtc
cctctgcgactgcgcggcacagactggccgcgacggctcgaggtacgcggtgaggtgtat
ttgccccttgccggcttcgaggcactcaagcaacgcatgctcgatcagggacaaacgccc
ttcaaaaacccgcgcaatgccgcggcggggagcctgcgccaactcgatccgtgcatcacc
gccagccgaccgctgaccatgttctgccatggcttcggcgctgtcgatgggggcgatctt
ggcgccacccagagcgccgcgctcgcccgcctgcgtgattttgggctgcgagtctgcccg
gagtcgacctgcgtcaccggcgccgagggttgcattgactaccagggggccatggccgcg
cgacgcgatgcactcgattacgaaatcgatggggtagtgttcaaggtggatgacctggca
gcccagcgacggctcggctttcgcgcgcgcgatccaatctgggcaatcgccttcaaatac
ccgccacgcgaagagcaaaccaaagtgagagcggtggaatttcaggtcggacgcactggt
gctgtcaccccagtggcgcggctcgagcccgtggatgtcgctggggtcaccgtctccaac
gccaccctgcataatatcgatgaagtccaccgcaaggacgtgcgcgccggcgataccgtg
atcgtgcggcgtgccggtgacgtcatccctgaagtcgtcggcgtggtcaccgccctgcgc
ccgccgggaaccgagccggttgccctgccatcgcactgcccggtatgcggctcggacgtc
atccgtgcggagggcgaggcggtcgcccgctgcagcggcggtctgatctgctccgcccaa
cgcaaagaggcgctcaagcattttgcctcgcgccgcgcgctcgatatcgacggacttggc
gacaaactgattgaacaactcattgagcaggatctggttaaaaccccagccgatctcttc
gcgctcagcccggagcaactatcaaatcttccgcgcatgggcgagaaatcagcaaagaat
ctcgtcgccaagctcgaccagagccgcgagacaaccctggccagattcatccacgcgctt
ggtattcgcgaagtgggggaaaccatggccacagcgctagccatgcattttggcgcactc
gagcccctgatggaggccgatgaagaagccctgatcgccattgacggcgtggggcagagg
gtcgcccagcatattcgcggcttcttcgcccaggagcacaaccgagaggtgatcgcgcat
ttgatcgaccccgatggcgccagactgcactggcccgatcctcctcgcccaaacgccccc
aaggacttacccctgactggcacaacctttgtcttgaccggcaccctgacgcgtccaaga
gatgacatgaaagcagagttgattgctcgcggagccaaagtcacgggcgccgtttcatcc
aacactgactatgtggtcgccggcgagaaccccggcagcaaggcgaccaaggccgcccag
ctcggcatccccgttctcgacgaaacccagctgcgcttactgcttgccgacccaggtccg
aatggcttgccataa
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