KEGG   Tripterygium wilfordii (thunder duke vine): 119980623
Entry
119980623         CDS       T07256                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
twl  Tripterygium wilfordii (thunder duke vine)
Pathway
twl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:twl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    119980623
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:twl03021]
    119980623
Enzymes [BR:twl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     119980623
Transcription machinery [BR:twl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     119980623
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 119980623
NCBI-ProteinID: XP_038679331
LinkDB
Position
16:complement(10252731..10267558)
AA seq 1482 aa
MDSNLHEEQQVKTAILTSIGFTVLNETDRERISAVPIDAASEVTDPKLGLPNWSSVCSTC
GATDRKHCEGHFGAIKFPFTILHPYYLSEVAQILNKVCPVCKSVRKKLHVKGVDSTSQEN
WPTFCRYCVGNSKDWYPKMKFRFSAQDPFKRTSIIVEVNEKFPKKGLKKVLPADYWDFIP
EDAQQGEICSKPNKRVLTHAQVRHLLNDVDPKFIKQFVSRIETIFLNSFPITPNCHRVTQ
VMHGFSKGERLIYDERTSAYRKLVDFRGTASELSLRLMDCLKISKLNAGKSLNDDPVTVV
LRKSKDPASDPYGLRWVKDVVLAKRNDHSFRMVVIGDPNIKTNEIGIPRHIAERLQIPEH
LNALNWEKLRAYCELCCHDKGMFFVRRKDSLIRCASVKDLQIGDVVSRPLSDGDIVLINR
PPSIHQHSIIALSVKVLPVTYVLCINPLCCSPLRGDFDGDCLHGYVPQSVETRVELNELV
ALDRQLINRQSGRNLLSLGHDSLTAAHLLLEHGALLDLFQMQQLKMFCPHQLVPPAIIEA
PSLNGFGWTGKQLFSMLLPREFNYASPSNSVCICNGELISSEGSTWLRETGSNFFQSLIK
SFPSNVLDFLYDAQETLCEWLSTRGLSVSLSDLYLTSDLRKNLMDEIFSGLQEAEQTCNF
KQLMVDSNQGLLVECFEEDEYVMGFDAEYLSYERQISASLNQVSVNAFKQVFRDIQNLFY
RYASKDNSMLAMCKAGSKGNLHKLVQNSLCLGLQYSAVPLSFEFPHRLSCAGWNKQKGIS
LIQKADKSAACPKSYIPYAVVENSFLSGLNPIESFVHSVTSRGSSFSDNADLPGTLSRRL
MYFLRDLHAAYDGTVRNAYGNQLVQFSYNADEDMSCLISNDCGRINACKVMDGEPVGSLA
ACAISEAAYSALDQPVSLLETSPLLNLKNVLECGSKKSNRHQSMSLFLSEKLGRQRHGFE
YGALEVKNHLEKLIFSDVVSISMIIFSPQTCGHMHFSPWVCHFHVSKEIVKRRRLKVHSV
IDLLHKRCNSVPNFPIVKIASKDCSVAHDEKEDNDTFCITVTVVENSKNSSIQLDAIRDL
VIPFLLGTVVKGVLEVKKVDIIWNDKPKVPKSNSPSSGELYLRVLMEGNCSKTRLWNVLL
NACLQIMDMIDWTRSHPDNIHDFCLANGIDAGWKFFLTNLECAIADIGKTILPEHLVLVT
NCLSATGEFVSLNAKGLALQREHASVSSPFVKACFSAPGQCFIKAAKAGVVDNLQGSLDA
LAWGKVPPIGTGGQFDIMYSGKGCELSEPLDVYDLLGSLNSSDKLNVKFQEPDTWRYTAE
CRVKSFNLPHSAVKGFNELMLRSHYSQEDIQNLSRTLSKILHSYPINHRINARDKSVLME
ALSFHPRKEDKFSSGVHEIKVGNHPKYENSRCFLLERADGTLEDFSYRKCVLGAYEIIAP
QRAKGYKSMWLKDDKYKPDPEVLACTEDISGPEDTTSDFCIS
NT seq 4449 nt   +upstreamnt  +downstreamnt
atggacagtaacttgcacgaggagcaacaagtgaaaactgctatcttaaccagcataggt
ttcactgtcttgaatgaaaccgatcgagaaagaatttctgctgtgccaattgatgctgca
agtgaggttactgatcctaagctggggctcccaaattggtcttcagtatgctccacctgt
ggagccacagatcgaaaacactgtgaaggtcattttggtgctattaagtttccattcacc
atattacatccatactatttatcagaagtcgcacaaattttgaataaagtttgtccagta
tgtaaatctgttcggaaaaaattacatgtcaagggagttgactcaacctctcaagaaaat
tggccgacattttgcagatattgtgtgggaaattcaaaagattggtatccaaaaatgaaa
tttagattctctgcacaagatcctttcaaaagaacttcgattatagttgaagtcaatgaa
aagtttccaaagaaaggattgaagaaagtattgcctgctgattattgggattttatccca
gaagatgcacagcaaggagaaatttgttcgaagccaaacaaaagggttttgacacatgca
caggttcgacacttgctgaatgatgttgacccaaagttcataaagcagtttgtttcaaga
atagagactatctttctcaactctttcccaataacaccaaattgccatcgtgtgacacaa
gttatgcatggattttctaaaggggaaagattaatttatgatgaaaggaccagtgcttac
aggaaactggttgattttagaggaacggctagtgagttgagtttgcgccttatggactgc
ctgaaaatttccaagttaaatgcaggcaagtctttaaatgatgatcctgtgacagtggta
cttagaaagagcaaagatccagcatccgatccttacggtctgagatgggtcaaagacgtt
gttcttgcaaagcgaaatgaccattcatttcgtatggttgttattggtgatccaaatatc
aaaaccaatgaaattggtatacccagacatattgcagagaggttgcaaattcctgagcat
ctgaatgccttgaactgggagaagttgcgtgcttattgtgaactatgttgtcatgacaag
ggtatgttttttgttcgtcgaaaagatagtctgattcgttgtgctagtgttaaggatcta
caaatcggagatgttgtgtctaggcctctaagtgatggagacattgtgttaataaatagg
cctccttctattcatcaacactccatcattgctctctccgttaaagtgcttccagtaact
tatgttctttgtattaatccattatgttgttccccactacgaggggattttgatggagat
tgccttcatggatatgtccctcaatccgttgaaacaagagtagagctgaatgagcttgtt
gctttagatagacagttaattaacaggcagagtggtagaaatcttctttcacttggccat
gatagcttgactgctgctcatttgttgttggagcatggggccctcttggacctctttcag
atgcagcagctaaaaatgttttgtcctcatcaattggtgcctccagcaattattgaagct
ccttcacttaatggttttggttggaccggaaagcagttatttagtatgcttctacctaga
gaatttaattatgcttctccttccaatagtgtctgcatttgtaatggggagcttatttct
tctgaaggatccacttggctacgtgagactggcagcaattttttccaaagtcttataaaa
agttttcctagtaatgtgcttgactttctctatgatgctcaggagacactttgtgaatgg
ttgtcgacgaggggcttgagtgtttcactgtcagatttgtacctaacttctgacttgagg
aaaaacttgatggatgaaatcttttctggtctacaagaagcagagcagacatgcaacttc
aaacagttgatggtggattctaatcaaggtcttcttgttgaatgttttgaagaagatgag
tatgtcatgggctttgatgcagagtacttgagctatgagaggcaaatatcagcctccctc
aatcaagtttctgttaatgcctttaagcaagtatttcgggatatacaaaatttgttctat
agatatgcaagtaaggataattcaatgctggctatgtgcaaggctgggagcaagggtaat
ctgcataaattggtccaaaatagcttgtgtcttggcctacaatattctgcagttccgttg
tcgtttgaatttccccatcgactctcatgcgctggttggaataagcaaaagggtatctct
ttaattcagaaggctgataaatctgctgcatgtcccaagtcttatatcccatacgccgtg
gttgaaaattcttttctttcgggattgaatccaattgaatctttcgttcattccgttaca
agtcgaggtagttctttcagtgacaatgcagatctcccaggcacattgtctagaaggctc
atgtattttctgcgtgatttgcacgctgcatatgatggaacagtgagaaatgcatatggg
aatcagctagttcagttctcttataatgctgatgaggatatgtcttgtttaattagcaac
gactgtgggagaattaatgcttgcaaagtcatggatggtgaacctgtgggttcattggcc
gcctgtgccatttctgaagcagcgtacagtgctttggatcaaccagttagtcttcttgaa
acgtcacctttgctaaatttgaagaatgttctggagtgtggttccaaaaaaagtaacaga
catcaaagtatgtcactgtttttgtctgagaaacttggaagacaaaggcatggttttgag
tacggagccttggaagttaagaaccatttggagaaacttatcttttcggatgttgtttct
atatcgatgataatcttctcaccacagacttgtggccacatgcatttcagtccttgggtc
tgccattttcatgtatccaaggaaattgtgaagcgtcgaagacttaaagtgcattcagtt
attgatttgctccacaagcggtgcaattctgtacccaattttccgattgtgaaaattgcg
agcaaggactgttctgtagctcatgacgagaaggaagataatgatacattttgtattact
gtcacagtcgttgaaaattccaaaaattcatccatacaattggatgccattcgagacttg
gtgatccctttccttcttggaacagttgtaaaaggggttttggaggtcaagaaggtcgat
attatatggaatgataagccgaaagtacccaaatcaaattcaccttcctctggtgaatta
tatttgagggttttaatggaaggaaattgcagcaaaacaagattatggaatgtgctattg
aatgcttgtctccagataatggatatgatcgactggacacgcagtcatccggacaacatt
catgatttctgtttggccaatgggatagatgctgggtggaaattctttctcactaatttg
gagtgcgcaatagctgatattggaaagactatactccctgaacatttggttcttgtcaca
aattgtctatctgctacgggggagttcgtcagcttaaatgcaaaaggcttggcactgcaa
agagaacatgcatctgtctcatcaccctttgtgaaggcttgcttttctgcccctggtcag
tgttttattaaagcggctaaggcaggagttgtcgataatcttcagggtagcctagatgct
ttggcgtggggaaaagttccacccattggtactggagggcagtttgatatcatgtattct
ggaaagggttgtgagctgtctgagcctttagatgtctatgatctgctgggcagcctgaac
agttccgacaagcttaatgtgaagtttcaagaacctgatacatggagatacactgctgaa
tgtagggtcaagtctttcaatctgcctcattctgctgttaaaggcttcaatgaacttatg
cttagaagtcattattcacaagaagatattcaaaacctctctcgtacattgagtaaaatt
ttacacagttatccgatcaatcatcggataaatgcaagggacaaatctgtcctaatggaa
gctttaagttttcatcctcggaaagaagacaagttcagcagtggagttcacgagataaag
gttggtaatcacccaaaatatgaaaattcacgatgctttttgctagaaagagcagatggt
accttagaagacttctcgtatcgcaagtgtgttcttggcgcttacgagattattgcccct
caaagggctaaaggctacaagtcgatgtggctaaaagatgacaaatataagccagaccca
gaagtcctagcctgcacagaagatatcagtggaccggaggatacgacttctgatttttgc
attagttga

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