Tripterygium wilfordii (thunder duke vine): 119996520
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Entry
119996520 CDS
T07256
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119996520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
twl03041
]
119996520
Spliceosome [BR:
twl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119996520
Complex C
U5 SnRNP specific factors
119996520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
SOI
Septin
Ras
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
119996520
NCBI-ProteinID:
XP_038699116
LinkDB
All DBs
Position
4:15282501..15288422
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AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPELDSDQESDREDEDEELPDQPHEEEATSDGEGGAPGPNGWITTSL
DVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVKDS
STYVSTQFLIGLMSNPALVRNVALVGNLQHGKTVFMDMLVEQTHHMSTFDPNNEKHMRYT
DTRVDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVINGH
ITAVSSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDSEKFASRLWG
DIYYHPDTRTFKKKPPSTGGERSFVEFVLEPLYKLYSQVIGEHKKSVEATLAELGVTLSN
AAYKLNVRPLLRLACSSVFGSASGFTDMLVKHIPSAKDAAARKVDHIYTGPKDSMIYQST
VDCDPSGPLMVNVTKLYPKPDCSVFDAFGRVYGGKIQTGQTVRVLGEGYSPDDEEDMTVK
EVTKLWIYQARYRIPIASAPPGTWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSDIEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIENGVV
SIDWSRRQLGDFFKTKYEWDLLAARSIWAFGPDRQGPNILLDDTLPTEVDKSLLGAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLNRGSGQIIPTARRVAYSSFLMATP
RLMEPVYYVEIQTPIDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQAADIHLQML
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttgtacgacgagtttggtaactatattggacctgaattagactctgac
caagagagtgacagagaggatgaagatgaggagcttcctgaccagccccatgaagaggag
gcgacatcagatggtgagggtggagcccctggtcccaatgggtggatcactacctcactt
gatgttgatatggataaccagattgttcttgctgaggacaagaagtattatccaactgcc
gaagaggtttatggtgaagatgttgaaacattggttatggatgaagatgagcaaccttta
gagcaaccgataattaaacctgttaagaatattaaatttgaggttggggtgaaggattct
tcaacatatgtatcaacccagtttcttatcggtctaatgtccaatcctgctcttgttcga
aatgtggcccttgtaggcaatctccagcatggcaagacagtattcatggatatgttggtt
gagcaaacacaccatatgtccacttttgacccaaataatgagaagcacatgagatataca
gatacaagggttgatgagcaagagagaagaatatcaatcaaggctgtcccaatgtcactt
gttcttgaggatagcaattcaaaatcatacctatgtaacataatggacacccctggtcat
gtcaatttctcagatgaaatgactgccgctctcaggctagcagatggtgctgtgttgatt
gttgatgctgctgaaggagtgatggtaaatacagaaagagctatacgccatgctattcaa
gagcgcttaccaattgtagttgtgattaacaaggttgacaggctgataacagaacttaag
ttgcctccaaaggatgcttaccataagctcaggcatacgttggaagtaattaatggccac
ataactgctgtatcttcaactgctggaaatgtgcaagtcatagatccagctgctggaaat
gtttgttttgccagtgcaactgcagggtggtcctttactctgcaatcgtttgctaaactt
tatgtcaagctccatgggatcccatttgactctgagaagtttgcatctcgtctttgggga
gatatatattatcatccagataccaggaccttcaaaaagaagcctccctccactggaggg
gaaagatcgtttgttgagtttgtgctcgagcctctctataaactatacagccaagtgatt
ggggaacataaaaagagtgtggaggcaactcttgcagagcttggggtcactcttagtaat
gctgcttacaaattgaatgttaggcccttactaaggttggcttgtagctcagtttttggt
tctgcctcaggctttacagatatgctggttaaacatataccttctgctaaagatgctgca
gccaggaaggttgatcatatatacacggggcccaaagattcgatgatttatcagtcaacg
gtagattgtgatccttctggccccttgatggttaatgtgactaaactgtatccaaagccc
gattgcagtgtctttgatgcttttggtagagtgtatggcggtaagatccagacagggcag
acagtgcgtgtgctaggagaaggctattctccagatgatgaggaagacatgacggtgaaa
gaagtaacaaaattatggatttatcaggctcgatataggatacctattgcaagtgctcct
ccaggtacttgggttctcatcgaaggtgtggatgcttctataatgaagactgccactcta
tgtaatgttgattatgacgaggatgtgtatatatttcggcctcttcagttcaatactctt
ccagtagtgaaaacagctacggagcctctaaatccaagtgaattgccaaaaatggtagag
ggtctcaggaagattagcaaaagctatcctttggccattaccaaggttgaggaatctggg
gagcacacaattttaggcactggagaattgtacctggattcaatcatgaaggatcttaga
gagctctattctgatatagaagtgaaggtggcagatcctgttgtttcattttgtgagaca
gtggttgagtcctcatcaatgaagtgctttgctgaaacaccaaataagaagaataaaata
accatgatcgcagaaccattggaaaaggggcttgcagaggacattgagaatggtgttgtt
agcattgattggagtcgaagacagcttggtgacttcttcaagacaaaatatgagtgggat
ttgcttgcagcacgatctatatgggcatttggccctgataggcagggacctaatatctta
ttagatgatacacttcccactgaggttgacaagagcttgctgggtgcagtcaaggattcc
attgttcaaggatttcaatggggtgctagagagggtccactttgcgacgagcctatcagg
aatgtcaagtttaaaatagttgatgcgaggattgcacctgaaccattgaatcggggatca
ggtcaaatcatacccacagctcgacgtgtggcctattcttccttccttatggcaacccct
cgactaatggagcctgtgtattatgtggagatacaaacaccaatcgactgtttatctgct
atctacacggtgttgtctcgtagacgtggacatgttacagctgatgttcctcaaccaggc
accccagcatacattgtgaaggcatttttacctgttatagagtcatttggttttgagacg
gatttgaggtaccatactcagggccaagcgttttccctctctgtgtttgaccactgggct
attgttcccggggatccacttgataagagcatagttctgcggccacttgaaccagcacct
atccagcacctcgctcgtgaatttatggtgaagacgaggcggagaaagggaatgagcgaa
gatgtgagcatcaacaagttcttcgatgaggctatgatggtggagctagctcagcaggca
gctgatattcatctgcagatgctatga
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